Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1467 ATGGAGAAACTCGGGGCTCCATTTAGGGGTATTGTGGATGATATCAGAGGAAGAGCAGCCTGTTATAAGCAAGATTGGATTGACGGTCGACTTTCAGGAATCGGAATTTTGGCTCCAACGGCTTACATTTTTTTCGCTTCTGCACTTCCTGTCATTGCTTTCGGTGAACAACTGAGCCGGGATACAGATGGAAGTTTGAGCACAGTTGAAACTTTGGCTTCAACAGCCATTTGTGGCATCATTCATGCAATTCTTGGTGGACAACCTCTTCTAGTAGTAGGAATTGCAGAACCAACAATTATTATGTATACCTATTTGTACAATTTTTGCAAAGATAGGAAAGATATAGGGAGAGATCTCTTCTTGGCTTGGGCAGGATGGGTTTGTGTCTGGACTGCCCTCTTACTGTTTCTGCTTGCTATATTCAACGCTTCCCGTCTTATCAACCGATTTACAAGGATTTCAGGGGAACTTTTTGGCATGCTAATCTCTGTTTTGTTCATTCAAGAAGCTATTAAGGGAGTGGTGAGCGAATTTGAAGTTCCAAAGGCCGAGGATCCTAGTTTAGAGAAGTTTCAATTTCATTGGCTTTACACGAATGGATTACTGGGAGTTGTTTTTACTATTGGCCTTCTCTATACTGCTTTAAAGAGCAGAAATGCAAGATCATGGTCGTATGGCACAGGCTGGCTAAGGAGTTTCATAGCAGATTATGGAGTTCCTCTGATGGTTCTTGTATGGACTGCACTATCATTTAGTGTACCAAGCAAAGTCCCCTTTGGAGTTCCTAGAAGACTTCAAAGTCCTCTCGCATGGCAATCGACTTCTCTGCATCATTGGACTGTTGTTCAGGACATGGGGAAGATACCTCCTGCATATATCTTTGCAGCCTTTGTTCCTGCTGTGATGATTGCAGGGCTTTATTTTTTTGATCATAGCGTTGCTTCTCAGATGGCACAACAAAAGGAGTTTAATCTCAAGAACCCTTCTGCCTACCACTATGACATCTTGTTGCTTGGATTTATGACGCTGCTTTGCGGGTTAATCGGGCTTCCTCCTTCGAATGGGGTTTTGCCACAGTCCCCCATGCACACCAAGTGTCTTGCAACTCTCAAGAGGCGTTTGATGCGAAGAAAGATGGTAGAAAGTGCAAAGGAAAGCATAAAAAGGAAAGCTAGTGATTCTGAAATCTATGGCCAAATGCAAGCTGTGTTCTTAGAAATGGATAGCAGCCCAATTACGACATCAGTAGTCAAAGAGCTGGAAGATTTGAAGGAGGCAGTCATGAAAGGTGAAAATAAGGATGAACTTGCAAATGATTTGTTCGATCCAGAGAAGCATATTGATGCTTATCTTCCCGTTCGAGTAAACGAGCAAAGATTGAGCAATCTGTTGCAATCGCTTCTGGTGGCAGCATCAGTTTTTGCTTTGCCAGCAGTAAAGAAGATACCAACATCAGTTCTTTGGGGATACTTTGCCTACATGGCCATTGACAGTCTACCTGGAAATCAATTCTGGGAAAGGATTTTATTTCTCTTCGTAATGCCTAATAGACGCTACAAGGTCCTAGAAGGCTTTCATGCTTCCTTTTTGGAATCTGTGCCATTCAAATACATAGCCGCATTCACTCTATTTCAATTTGTATATCTCCTCATTTGTTTTGGAGTGACATGGATCCCCATAGCTGGAGTCTTGTTTCCTTTGCCTTTCTTCCTTCTCATCGGCATAAGACATCACATCCTTCCCAAGCTACTCCAACCTCGTTATTTGCAGGAGCTCGATGCAGCCGAGTACGAAGAAATAACCGGTACCCCGGTTCTCTCTCTTAGCCTTTCTATCAAGGAAAAGGATACCATTCAAATAGTTAATAGTGAAGATGAAGTTGAAATATGTGATGCTGAAATATTAGATCAGCTGACCACCCATAGAGGGGAGTTGAAGGTTAGAACTAGAAGCTTCACTGACGAGAGACACTGCCAGGTTTATCCTGACCAAAAAATTGGCAGTGGAAAACACTAA 2019 42.64 MEKLGAPFRGIVDDIRGRAACYKQDWIDGRLSGIGILAPTAYIFFASALPVIAFGEQLSRDTDGSLSTVETLASTAICGIIHAILGGQPLLVVGIAEPTIIMYTYLYNFCKDRKDIGRDLFLAWAGWVCVWTALLLFLLAIFNASRLINRFTRISGELFGMLISVLFIQEAIKGVVSEFEVPKAEDPSLEKFQFHWLYTNGLLGVVFTIGLLYTALKSRNARSWSYGTGWLRSFIADYGVPLMVLVWTALSFSVPSKVPFGVPRRLQSPLAWQSTSLHHWTVVQDMGKIPPAYIFAAFVPAVMIAGLYFFDHSVASQMAQQKEFNLKNPSAYHYDILLLGFMTLLCGLIGLPPSNGVLPQSPMHTKCLATLKRRLMRRKMVESAKESIKRKASDSEIYGQMQAVFLEMDSSPITTSVVKELEDLKEAVMKGENKDELANDLFDPEKHIDAYLPVRVNEQRLSNLLQSLLVAASVFALPAVKKIPTSVLWGYFAYMAIDSLPGNQFWERILFLFVMPNRRYKVLEGFHASFLESVPFKYIAAFTLFQFVYLLICFGVTWIPIAGVLFPLPFFLLIGIRHHILPKLLQPRYLQELDAAEYEEITGTPVLSLSLSIKEKDTIQIVNSEDEVEICDAEILDQLTTHRGELKVRTRSFTDERHCQVYPDQKIGSGKH 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28389525 28396765 - Sed0024677.1 Sed05g1467 714093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1467 672 Pfam HCO3- transporter integral membrane domain 202 373 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed05g1467 672 Pfam HCO3- transporter integral membrane domain 454 596 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed05g1467 672 Pfam HCO3- transporter integral membrane domain 7 181 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed05g1467 672 PANTHER ANION EXCHANGE PROTEIN 6 642 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Sed05g1467 672 Gene3D Helical hairpin bin 18 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1589 Sed-Chr3:10096033 Sed05g1467 Sed-Chr5:28389525 4.50E-258 dispersed
Sed03g1590 Sed-Chr3:10096502 Sed05g1467 Sed-Chr5:28389525 4.50E-258 dispersed
Sed05g1467 Sed-Chr5:28389525 Sed06g1217 Sed-Chr6:35437882 2.30E-217 dispersed
Sed05g1467 Sed-Chr5:28389525 Sed06g2136 Sed-Chr6:45177084 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1467 K24194 - csv:101210964 1179.08