Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1501 ATGGAAAGCTCAGGCAAGATGGTGTTTCCTGGTTGCTCCATTTCCCCCTCTCTCCATCCTTGCATATCCAATCTCTCTTCGATGGTACCTCTCCTTTCTCTCCACAACCCAATAATCCCGGGGAAGAAATTGAAAGTGCAGCAACAACAGAAGTTTCCTTTGAAAATTGACATTCTTAAGAACCTCAAAAATAGTTGCATGAAATGGGTGGATGGATTTGTTGATTCAGTGTTTCAATTCTCAGATCAAACCCTTCACCCAAATCAGAGTAACCTTGCGCCGGTTGAAGAGATCGGAGCGGCAGCTGAAGTTACCGACATCCAAGGAACACTCCCACAAGAATTTCCTCAAGGAATCTTCATAAGAAATGGACCAAATCCAGCATTTGGAGGATTAAAATCAACCCATTCCATATTTGGAAGATCGAGTTACATATGGGTGGAAGGAGAAGGAATGCTTCACGCCTTGTACTTCACCAAACACTCCAATTATAATGGCCATTGGATTGTACTCTACAACAACAGATATGTCCAAACACAAACATTCAAACTCGAAAACTATGTCAAGAACAAGCCCTGTTTCCTCCCCGCTATCGAAGGCGATTCTCTCGCTGTTCTCTCTGCTTTTTTCCTCAACTGGGTTAGGTTTGGTGAAGTGAACAGGGACTTGAGCAACACCAACGTGTTTGAGCACGCGGGGAAGTTTTACTCTGTCGCTGAGAATTCGATGCCCCAAGAAATCGACATCTTGACTTTGGAAAGTTTGGGAACTTGGGATTTCCATGGTGCTTGGAATCGACCCTTTACCAGTCATCCTAAGAAAGCTCCGGTAACCGGCGAACTCGTCACTATGGGCATTGCTCCCACCAAACCCTACATGGAACTCGGAATTATTTCAGAAGATGGAAAGCGATTCGTACATAAAGTGGATATGAAACTAAGTAGAAGTAGCCTCACCCATGAAATTGGTGTCACGGAGAGGTATAATGTGATATTGGATTACCCCGTGATTATCGACTTGAACCGACTTATGAGAGGCGGATCGTTAATAAAATACGAGAAGAAATCATACGCCAAAATTGGAGTAATGCCTCGTTATGGAGATGCGGATTCAATACAGTGGTTTCACGTTAAGCCCAACTGCACCATGCATCTTTTCAACTGCTTTGAACACAACCATGAGGTTGTAGTATGGGGATGTAGAGCTACGGATTCAGTGATACCAGGACCAGAAAAAGGAGTGAACAAATTCGAGTGGTTTTCTGAGAGATTTAAAGAACCATTAACCGATCATCAAAACGTCGAAGATGGCTCGTTGATGTCTCGTGTTTACGAATGGAGGCTCGACCTCGAAACCGGGGAGGCGAGGGAGAGACATCTCACTGCAGCTCAATTTTCCATGGATTTTCCCTTCATAAATCCACGCTTCATTGGTCTTCAAAATAAATTTGGATATGCCCAAGTTCTTGACTCCATGGCTAGTTCTAATTCAGGGATGTTTAAATTTGGGGGCTTGGCAAAGTTACATTTTGAAGAGCCTCAAAGTTCATCGACAATAAAAGTGGAGTATCATATGATGGAGAGCAACTGCTTTTGCAGCGGAACTTCGTTTGTTCCCAAAGAAAATGGAATCCAAGAAGATGATGGTTGGATTATCACATTTGTTCACAATGAAATCACTAATACATCTCAGGTATATGTAATTGATGCAAACAAGTTCAGCAACCAGCCAGTAGCCAAAATCACATTGCCACACAGAGTTCCCTACGGTTTCCATGGTGCCTTCGTGCCCTTTCCATTTGACAAAAAATGA 1812 43.16 MESSGKMVFPGCSISPSLHPCISNLSSMVPLLSLHNPIIPGKKLKVQQQQKFPLKIDILKNLKNSCMKWVDGFVDSVFQFSDQTLHPNQSNLAPVEEIGAAAEVTDIQGTLPQEFPQGIFIRNGPNPAFGGLKSTHSIFGRSSYIWVEGEGMLHALYFTKHSNYNGHWIVLYNNRYVQTQTFKLENYVKNKPCFLPAIEGDSLAVLSAFFLNWVRFGEVNRDLSNTNVFEHAGKFYSVAENSMPQEIDILTLESLGTWDFHGAWNRPFTSHPKKAPVTGELVTMGIAPTKPYMELGIISEDGKRFVHKVDMKLSRSSLTHEIGVTERYNVILDYPVIIDLNRLMRGGSLIKYEKKSYAKIGVMPRYGDADSIQWFHVKPNCTMHLFNCFEHNHEVVVWGCRATDSVIPGPEKGVNKFEWFSERFKEPLTDHQNVEDGSLMSRVYEWRLDLETGEARERHLTAAQFSMDFPFINPRFIGLQNKFGYAQVLDSMASSNSGMFKFGGLAKLHFEEPQSSSTIKVEYHMMESNCFCSGTSFVPKENGIQEDDGWIITFVHNEITNTSQVYVIDANKFSNQPVAKITLPHRVPYGFHGAFVPFPFDKK 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28702356 28708556 - Sed0013565.1 Sed05g1501 714127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1501 603 Pfam Retinal pigment epithelial membrane protein 94 597 IPR004294 GO:0016702(InterPro)
Sed05g1501 603 PANTHER BETA-CAROTENE DIOXYGENASE 78 597 IPR004294 GO:0009570(PANTHER)|GO:0010436(PANTHER)|GO:0016121(PANTHER)|GO:0016702(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1501 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1501 Sed-Chr5:28702356 Sed07g0649 Sed-Chr7:4873698 5.20E-56 dispersed
Sed05g1501 Sed-Chr5:28702356 Sed13g0664 Sed-Chr13:4578568 2.80E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g299 . . . . . . Bma04g00406 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04552 Chy04g00151 . . . . . . . . . Sed05g1501 . . . . . . . . Bhi09g02580 Tan01g3935 Cmetu04g3147 . Hepe01g2222 Mch11g0771 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005967 1 1 1 1 0 0 1 1 1 1 1 1 1 1 2 1 1 3 1 1 2 1 1 2 1 1 1 1 1 4 36