Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1506 ATGATGGCTGTGACCTCCAGCTTCAAGGATGCTGCTAGTAATATGAGCAGTTTGGATAATGGGAAGTATGTTAGGTATACACCTGAGCAAGTTGATGCTCTTGAGAGGCTTTATTATGAATGCCCAAAACCTAGTTCTATACGCCGCCAGCAGCTTATCAGGGAGTGCCCAATTCTCTCCCATATCGAATCCAAGCAGATCAAAGTTTGGTTCCAGAATCGGAGATGTAGAGAGAAGCAGAGGAAAGAGGCATCTCGCCTGCAGACTGTGAACAAGAAGCTGACTGCTATGAATAGACTTCTAATGGAGGAAAATGATAGGTTGCAGAAACAGGTTTCTCAGCTTGTGTATGAAAACAGCTATTTTCGTCAACAGACCCAGAATCCGACCCTAGCTACCACCGACACAAGTTGCGAGTCAGTGGTCACAAGTGGTCAGCAGAATTTGACTCCGCCGCATCCACCAAAGGATGCCAGCCCCGCAGGACTTTTGTCCATTGCGGACGAGACTTTAGCTGAGTTTCTTTCAAAAGCTACTGGAACTGCTGTCGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGAGTTGCAGCCCGTGCCTGTGGACTTGTTGGTCTCGAACCTACAAGAGTGGCTGAAATTCTTAAAGATTGGCCTTCTTGGTTTCGGGAATGCCGCGCTGTTGACGTTCTAAATGTTCTAAATACTGGAAATGGAGGAACCATTGAACTTCTTTACATGCAGCTCTATGCACCTACTACTTTGGCACCTGCTCGTGATTTCTGGCTGCTGCGATACACATCTGTTTTGGAGGATGGTAGTCTTGTGGTATGTGAAAGATCCCTTAACAATACTCAAAATGGTCCTAGTATGCCACCAGTACAAAACTTTGTAAGAGCAGAAATTCTACCAAGTGGATATTTGATAAGACCTTGTGAAGGGGGTGGATCAATAATACATATTGTTGATCACATGGACTTGGAACCTTGGAGTGTGCCTGAAGTGTTGCGGCCATTATACAAGTCATCGACTCTACTTGCTCAGAAGAACACAATGGCTGCGTTACGATTGTTGAGACAGATTTCACAAGAAGTTTCTCAACCAAATACTACCGGATGGGGAAGAAGACCTGCTGCTCTTCGTGCTCTTAGTCAGAAATTGAGCAGAGGTTTCAACGAAGCAGTTAATGGATTTACAGACGAGGGATGGTCTTTGTTAGAAAATGATGGCATTGATGATGTTGCACTTCTTGTAAACATGTCTCATAACAAGGCAATGATGGGTGCAGATGTTTCATATTCTAATGGCTTTCCATCTATGAGCAACGCAGTGCTTTGTGCCAAAGCATCAATGTTATTACAGAATGTCACTCCAGCTATGCTCATTAGGTTCTTGAGAGAACACCGATCAGAATGGGCAGACAGCAGTATTGATGCTTACTCAGCTGCAGCAATTAAGACTGGTCAGTGTGGGTTACCCGGATCTCAGGCCGGAACTTTTGGGGGCCAGGTGATTCTTCCTTTGGCACAAACAGCAGAGCACGAAGAGTTTATGGAAGTTGTTAAATTTGAAAACGTGAGCCACTATAGGGATGATCTGCTCATGCCTGGTGAAATCTTCCTCATCCAACTTTGCAATGGTGTGGATGAGAATGCAGTTGGAACTTCTGCTGAACTCATCTTTGCTCCGATTGATGCCTCTTTTTCGGATGATGCACCTATTTTACCATCTGGCTTCCGCATCATTCCTCTAGATTCCGGAATGGATGCTTCGAGTCCAAACCGTACACTTGATCTTGCTTCAGCTCTTGATGTTGGACCTGCAGGGAATAGAGCTTCTGGTGATTTTGCTGGTCAATCAGGAAAATCAAAATCTGTGATGACAATTGCATTCCAATTTGTATTTGATGTACACCTTCAAGATAATGTAGCAGCGATGGCACGGCAGTATGTCCGGAGCATTATAGCATCTGTTCAGAGGGTGGCACTGGCTCTTTCACCTTCGAATTTCGGTCCTAATGCTAACCTTCAGACACCAGCTGGTGCTCCCGAAGCTCAAACACTTGCTCGTTGGATCTGTCAAAGCTATAGGTGCTATATGGGCATGGAATTACTGAAAAATGAAGAAAGAGAATCTGATCTCAAATCCGTTTGGCATCACTCAGATGCAGTCATGTGCTGCTCTTTGAAGGCATTGCCAAACTTTACATTTGCAAATCAATCTGGACTTGATATGCTTGAGACAACCTTGGTGGCTCTCCAAGACATTACTCTGGAGAAGATTTTTGATGACAATGGAAAGAAAATTTTAGCCTCAGAGTTCCCGCGGATAATGCAACAGGGCTTCATTTGTCTTCAAGGTGGCGTCTGCTTATCAAGCATGGGAAGGGCAGTATCCTATGAGAAAGCTGTGGCATGGAAGGTTTTGAATGAAGAAGAAAACGCTCACTGTATTTGCTTCATGTTTATGAATTGGTCTTTTGTTTGA 2529 44.6 MMAVTSSFKDAASNMSSLDNGKYVRYTPEQVDALERLYYECPKPSSIRRQQLIRECPILSHIESKQIKVWFQNRRCREKQRKEASRLQTVNKKLTAMNRLLMEENDRLQKQVSQLVYENSYFRQQTQNPTLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIADETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWPSWFRECRAVDVLNVLNTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQNFVRAEILPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNTTGWGRRPAALRALSQKLSRGFNEAVNGFTDEGWSLLENDGIDDVALLVNMSHNKAMMGADVSYSNGFPSMSNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADSSIDAYSAAAIKTGQCGLPGSQAGTFGGQVILPLAQTAEHEEFMEVVKFENVSHYRDDLLMPGEIFLIQLCNGVDENAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSGMDASSPNRTLDLASALDVGPAGNRASGDFAGQSGKSKSVMTIAFQFVFDVHLQDNVAAMARQYVRSIIASVQRVALALSPSNFGPNANLQTPAGAPEAQTLARWICQSYRCYMGMELLKNEERESDLKSVWHHSDAVMCCSLKALPNFTFANQSGLDMLETTLVALQDITLEKIFDDNGKKILASEFPRIMQQGFICLQGGVCLSSMGRAVSYEKAVAWKVLNEEENAHCICFMFMNWSFV 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28762384 28770261 + Sed0006198.1 Sed05g1506 714132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1506 842 Gene3D - 201 377 IPR023393 -
Sed05g1506 842 Pfam Homeodomain 22 80 IPR001356 GO:0003677(InterPro)
Sed05g1506 842 CDD START_ArGLABRA2_like 160 375 - -
Sed05g1506 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 17 842 IPR044830 GO:0003700(InterPro)
Sed05g1506 842 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677(InterPro)
Sed05g1506 842 SMART HOX_1 19 85 IPR001356 GO:0003677(InterPro)
Sed05g1506 842 Gene3D - 14 88 - -
Sed05g1506 842 Pfam MEKHLA domain 701 841 IPR013978 -
Sed05g1506 842 SUPERFAMILY Homeodomain-like 20 84 IPR009057 -
Sed05g1506 842 SUPERFAMILY Bet v1-like 165 375 - -
Sed05g1506 842 SMART START_1 165 375 IPR002913 GO:0008289(InterPro)
Sed05g1506 842 Pfam START domain 166 374 IPR002913 GO:0008289(InterPro)
Sed05g1506 842 Coils Coil 91 118 - -
Sed05g1506 842 CDD bZIP 74 113 - -
Sed05g1506 842 CDD homeodomain 22 82 IPR001356 GO:0003677(InterPro)
Sed05g1506 842 ProSiteProfiles START domain profile. 156 370 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1506 Sed-Chr5:28762384 Sed12g1392 Sed-Chr12:11247945 0.00E+00 dispersed
Sed05g1506 Sed-Chr5:28762384 Sed05g1507 Sed-Chr5:28762384 0.00E+00 tandem
Sed12g1391 Sed-Chr12:11247945 Sed05g1506 Sed-Chr5:28762384 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38533 PF01852 START 1.60E-52 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1506 K09338 - csv:101218438 1613.59