Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1516 ATGTTTTCGATCTCTGCCATTAATGATACAGACTCGAGAAATCAGTGGGAACCCTTGGCTCCCACTAAAGAAGCTCAGGAATTCCATCTGACACAAACTTACCACGATGGACTTCTTAAGTTACAAGCAAAAGAATATGAAAAGGCTCGTGAATTGTTAGAATCCGTTCTCAAAGATCATTTGATAGCATCTGCACAGGTTGACGGCGAAGCTGGTGATAATCATCTACTACAGCTCAGATTCTTAGCACTTAAGAATCTTGCCACAGTATTTCTACAACAGGGATCAGCACATTATGAAGGTGCTCTGCATTGTTATCTTCAAGCAGTGGAAATTGATTCAAAAGATTCTGTTGTTTGGAATCAGCTGGGTACTTTATCTTGCTCAATGGGCTTACTTAGTATCTCACGTTGGGCATTCGAGCAAGGACTTGTATGCAGCCCTAATAATTGGAACTGCATGGAGAAACTATTGGAAGTTCTAATTGCCATACGTGATGAGGTTGCCTGTCTTTCTGTAGCGGAATTGGTTTTGAGGCACTGGCCATCACATGCTCGTGCATTGCATGTGAAACATACTATTGAAGAGTCAGAACCCGTTCCATATGCACCCAAAGGTATTGATAAGCTAGAACCAAAACATGTCCGACTCAAATTTGTTGATAAGAGGAAGGCTAGTGAAGAGGTTCTTGATGAAGATGTCAAAGTTAAAAGGCCAAACCAGAATATAGATCTCCACCTAGCAGAAGCTTCCTGGGTAGGTCTTGTTGATGCACTTCTAGATATCTTACGGCCATTGAGCGGATGTGGGTCTGAGGTGGAGGCTGAAAAAGCACTTAGATCTGGTGATGTTAGATTAAAAATATGCTTAACTTCCAGTTCAGATCGTAGTACTGCATTTATGGAGAGAAACGAGCTAGATTCTACCTCCATTTGTGGAAATACATCTCTTGCAGATTCCAACGCAGAAAATTCATCTTTTTTTAAGGAAAAAGAGGCAAGTGGTTTAGATGAACAACCACAGGAGAGACGTAGTACACGTCTTGAAAGGCTAAGAAGTCGTAAGCCTGGAAAAGAAGAATTTGATTATTCACCAAGTAAAGATCTGGCCAGGGTTGTAACCCAGTATCTTGAACCCTTTATTTCCGGTGCATTGGGAACCAAAGATACCAACCATGATGCTAGTAATTCTGTTTTCTATCCTGATCGGGAGAATTCATGGGGTTTGGATTGCAATGACGTTCATTCTTTTTTGGTAGAAACTTCCTTTAATTATGGTGCATACCATGTGAGTCATATGCTTCTAGAAAAGCTCTCAAGCATACATCCCTCTTATCAGGATGCCTTTATCAAATTTCTGGACTTGGAAAAGTTGACAAGACATTGGGGAAAGGACAGATCTCTTGAATGCAATCTTTTTCTTGCTGAACTCTATTTTGACTTTGGCTCATCTTCTTCTGATACTTCCAAGCAATCTGAATTCATGTCAGAGGCTTCATATCATCTCTGTAAGATCATTGAATTAGTAGCCCTGGAGTATCCCTTGAATTTGAGTTCTGTCCCAAAAAGTGATAATTACTCTAGTAGCCTTCAAGGTGCCAGCAAAATATCATCTGAAAATTCTAGTGACCAGCATTTATTCGTTGAAATTTTACTTCTAACAAATAACAGGTCCTTCTGGGTTCGATTCTTTTGGCTTAGTGGGCAATTATCTTTGCAGGATGGGAACAAAGCAAAAGCCTGTGAAGAGTTCTGTGTTTCTTTATCGCATTTGGAAAAAAAGAATGATGTGAATGATTCTCCGTCACTGGTCTGCTTCCCTCACTGTCGGGTTTTGAAAAGGTTAACCTCGGATAGAATATTTTATGAAATTAACATTTTAAAGGTTGACCTCTTGATGGAGAATAATGCTGTCCCTGAGATGTTTGAGAAAAAAATGTACAAGGAGTGCATCACTTTACTTTCTCCACTGCTATTTGGTGTACAGGAAGTTGATGATGCCTTATCCTTGCATCTTTTGGGAAGAAAAGATGCAGGGAATACTTCGGTTGAACTTGCAGCAATTGATGTTTTAATCAAATCTTGTGAGAAGGAAAATCATTTGGATATTGAGATATATTTGAATTCTCACCAACGGAAGCTGCAAATACTCATGGCAGCTGCTGGAATGCATGAATACTATACAACAAGTAAATCCTTTCGTGAGAAGTCAGAGGCAAAAACGGTCTCTGATATAGAAACGAAGGATAGTGCAAGTAGTCACTGTAACCATCTAGTTGCAGAAGAAGTTAAAGCAATATCTCAATGTATATCACAAGTGAAGAACTCAACCGAACATTCTGGAGACTCTAATGACATCCAGACGAGGAGGATTTGTGATATGCAGTTCTTGCTTTTATCTGTCATGTGTAACGTTATAAACATATTCCTCTCCAAGAAGTCTTCTGGGGCAGAAGTTGATGATCAAGTTGAAAGATGCTGCCTCGTAGATGCAGCCATTGCATTCTGCAAACTCCAACATCTTGATCTTTCCGTTCCTGTGAAATCTCACGTTGAGTTAATTGTTGCAACACATGACCTACTTGCAGAATATGGTCTCTGCTGTTGGGGTGAGGGCGAAGGAGAGGAAGGAAAATTTCTTAAATTTTCTATAAAGCATCTCTTAGCTTTGGATATGAAACTTAAATTGAATAGCTCAATAAATGGAAAAAGAATTGGATGTGATGATATGGAATGGCAGAATTGTCAGGTAAAGGTATCTCCAGACCGATCAAAAGTGAATGCTCAAGATTTGGGGTCAAGTCAAAATGATGAAACGAAATTCACAGTGGAGGATGCTAGGGAGGATACAACACAGGAAGACTTGTCAACTCATAAATTAATATTGAAAGATGCTACAGAAGGAGAATTTTTTAAGCAAGGAAGTGAGGAGTCGGTTGGCAAGTTCATTGCTGGTGAAGATAATAGCGACCAGCTAGTAGAATGTGAGAATGAGCAAAATGAAGATGAAAAGGAGGAGCTAGAATTAAAAATTGACAATGCCTTGGATCAGTGCTTTTTCTGCTTGTATGGGTTAAACCTCAGATGTGAATCATCATATGACGATGATCTATCTCAGCATAAAAACACTAGCCGTGGGGATTATCAGACTAAGGAACAGTGTGCTGATGTTTTCCAGTATATACTCCCTTATGCAAAGGCTTCAACTAGAACTGGACTAGTCAAACTGCGAAGGGTTCTAAGAGCTATCCGCAAACACTTTTTAAAACCACCAGAGGATCTATTGGATGGAAATGTGATAGACAAGTTCCTGGATGATCCCAGTTTGTGTGAAGAGAAACTCTCTGACGAAGCTGGTTCGGATGAGTTTCTTGTAACAATGACAAAGATAGTACTGAATGATGTAGGAAGCATTAAACAGTATCGAACATCAGTCTTAGGGAGTTCTGAACCATATTTGGAAGTTTATAGCAACTTGTATTATTTCCTTGCTCAATCTGAGGAAATGAGTGCAACTGACAAATGGCCAGGTTTTGTGCTTACCAAGGAAGGCGAGGAGTTTGTACAACATAATGCAAACCTCTTCAAATATGATCTGCTGTATAATCCTCTCCGATTTGAGAGCTGGCAAAAACTTGCACATATTTATGACGAGGAGGTAGACCTGTTGCTCAATGATGGTAGTAAGCACATCAATGTTGCAGGATGGAGGAAAAGTGAAACTTTACCACATAGAGTAGAGATTAGCCGAAGGAGGAGCAGGCGTTGTCTACTAATGAGTTTAGCTTTAGCAAAGTCACCAACTCAGCAGCGTGAAATACATGAGCTATTAGCACTTGTATACTACGACAGCCTTCAAAATGTGGTTCCATTTTATGATCAGCGGTCTGTGGTGCCTTCGAAGGATGAAGCATGGTTCAGATTTTGTGAGAACTCATTGAAACATTTCAAAAAAGCTTTTGCACATCAGCAAGATTGGTCTCATGCATTCTACATGGGCAAACTTGGTGAAAAGCTTGGGCTCTCACATGATAAAGCTCTATCATATTATGATAAAGCTATTGCCTTAAATCCATCTGCTGTCGATTCTATTTACAGGATGCATGCATCACGCTTGAAGTTTCTGGGTAAATGTGGAAAACGAGATCTGCAGGCTTTGAAGGACCTTTCAACTTATGCCTTTAATGAGTCAACTAAAGATGCTGTGATGGAAATATCAAGTAAGTTTGGTCCCAAGACTTCGAAGTTACCTGCAGGCATGGATGGAAGTGAAGCAGATTCTGAGATAAGGCATGATGAATTCCTCAAAGTGGAAGAGGCATGGCACATGCTTTATAGCGATTGTCTTTCTGGTCTCGAAACTTGCGTTGAAGGAGATCTTAAACATTATCATAAAGCCAGATATACACTTGCTCAAGGTCTTTATAAAAGGGGTGAGAGCGGCGATGTGGACCGAGCAAAGGATGAGCTCTCATTTTGTTTTAAATCAACTCGTTCATCCTTTACAATAAATATGTGGGAAATTGACAGCATGGTCAAAAAGGGAAGGCGCAAAACACCCGGCCTTTCTGGGAATAGGAAAGCACTTGAAGTTAATTTACCAGAAAGTTCTCGGAAGTTCATTACATGCATTAGGAAGTACTTGTTGTTTTATTTGAAACTTCTGGAGGAGACTGGAGATATCTGTACCCTTGAGCGTGCTTATGTATCACTTCGAGCTGATAAAAGGTTCGCATTGTGCATTGAAGATATTGTTCCAGTTGCTCTAGGGATGTATGTCAAGGTTTTGATCACGTCCATTCGTCAAGTTGGGATTGCTAGCTCTGGTGATGCAAGCAGTTACGAACATATACTCGAAAAAATGTTTGCTCTGTTTTTGGAGCAGGGTAACTTATGGCCAGAATTGTGCAGTTTGCCTGAAATACAAGGCCCGGGTATATCCGAAAGCAATTTGTTTGGGTATCTTCATGATCATATCATTACTTTGGAGAGAAATGTCAAGGTTGAGAATCTTGAAGCAATGAATGAGAAGATTCGCAAACGTTTTAAGAACCCGAAGTTGTCTAATATTAACATTGCAAAAGTTTGCAGGCATGCTTCTACTGCATGGTGTAGATCACTTATAATTAATTTGGCACTAATCACTCCCGTACCTTCTGAATCCTCTACTGAAATTCAAACGTCAAGTTCATTACCTGTTGGCTTGGAAAGTAACCAGCTTCTTTGTGTGGATTTGCAAATTAATGAACTATGGGGTTCAACATTTGAAGACTCAACACATCTGAAAAGCCTTGAACCAAAGTGGTGCCCGATCTTGTCGAAAATCAATAACATTTTTGTTAAACGAGCTGCAGAAGTGAATTGGGAAACTGCTAACTCGATGCTTCGATCTTCTTACAACTTTTTTCGTGAGAGTTCTTGTGCGCTCCCGTCTGGCTTGAACCTGTATCTAGTTCCATATAGATTAGCAACAGGAGTGAACTTCCAACATCGCATGGATGGGGTTGAAATTCTAGATTTCAGCTTGCCAAGGAAGCTTCTCTTGTGGGCGTTCACCTTAGTGCATGGTCATTTTGCTAACATTTCATCCGTGGTGAAGCATTGCGAAGAACATTTAAAGCCGAAGTTAAAGAAGGGGGCTGGAAATCACGGCACACAAACGCTTGCAAACTTGCCTGCAGTGATCACTTCACCATCAGTTCTAGGCATCGGAAAAGATGGTTCGAACTACAATGGGGAGACTGATGCAGAAGCATCTCCAGCCACCCCTGTTGCATCGACTTCGTTGCCAGAGGGTCAGACCACGATCAGTACAATTCCATTTCTTTCCAGCGGCGACACTCGGCAGAGTTCATTTCATGTCCCCCAACTTCAACAATGTAGCAGCAACATTGCTGAGAAGATAGGTAATGGAGGAGATTCAGACAAAGGATGA 5934 40.53 MFSISAINDTDSRNQWEPLAPTKEAQEFHLTQTYHDGLLKLQAKEYEKARELLESVLKDHLIASAQVDGEAGDNHLLQLRFLALKNLATVFLQQGSAHYEGALHCYLQAVEIDSKDSVVWNQLGTLSCSMGLLSISRWAFEQGLVCSPNNWNCMEKLLEVLIAIRDEVACLSVAELVLRHWPSHARALHVKHTIEESEPVPYAPKGIDKLEPKHVRLKFVDKRKASEEVLDEDVKVKRPNQNIDLHLAEASWVGLVDALLDILRPLSGCGSEVEAEKALRSGDVRLKICLTSSSDRSTAFMERNELDSTSICGNTSLADSNAENSSFFKEKEASGLDEQPQERRSTRLERLRSRKPGKEEFDYSPSKDLARVVTQYLEPFISGALGTKDTNHDASNSVFYPDRENSWGLDCNDVHSFLVETSFNYGAYHVSHMLLEKLSSIHPSYQDAFIKFLDLEKLTRHWGKDRSLECNLFLAELYFDFGSSSSDTSKQSEFMSEASYHLCKIIELVALEYPLNLSSVPKSDNYSSSLQGASKISSENSSDQHLFVEILLLTNNRSFWVRFFWLSGQLSLQDGNKAKACEEFCVSLSHLEKKNDVNDSPSLVCFPHCRVLKRLTSDRIFYEINILKVDLLMENNAVPEMFEKKMYKECITLLSPLLFGVQEVDDALSLHLLGRKDAGNTSVELAAIDVLIKSCEKENHLDIEIYLNSHQRKLQILMAAAGMHEYYTTSKSFREKSEAKTVSDIETKDSASSHCNHLVAEEVKAISQCISQVKNSTEHSGDSNDIQTRRICDMQFLLLSVMCNVINIFLSKKSSGAEVDDQVERCCLVDAAIAFCKLQHLDLSVPVKSHVELIVATHDLLAEYGLCCWGEGEGEEGKFLKFSIKHLLALDMKLKLNSSINGKRIGCDDMEWQNCQVKVSPDRSKVNAQDLGSSQNDETKFTVEDAREDTTQEDLSTHKLILKDATEGEFFKQGSEESVGKFIAGEDNSDQLVECENEQNEDEKEELELKIDNALDQCFFCLYGLNLRCESSYDDDLSQHKNTSRGDYQTKEQCADVFQYILPYAKASTRTGLVKLRRVLRAIRKHFLKPPEDLLDGNVIDKFLDDPSLCEEKLSDEAGSDEFLVTMTKIVLNDVGSIKQYRTSVLGSSEPYLEVYSNLYYFLAQSEEMSATDKWPGFVLTKEGEEFVQHNANLFKYDLLYNPLRFESWQKLAHIYDEEVDLLLNDGSKHINVAGWRKSETLPHRVEISRRRSRRCLLMSLALAKSPTQQREIHELLALVYYDSLQNVVPFYDQRSVVPSKDEAWFRFCENSLKHFKKAFAHQQDWSHAFYMGKLGEKLGLSHDKALSYYDKAIALNPSAVDSIYRMHASRLKFLGKCGKRDLQALKDLSTYAFNESTKDAVMEISSKFGPKTSKLPAGMDGSEADSEIRHDEFLKVEEAWHMLYSDCLSGLETCVEGDLKHYHKARYTLAQGLYKRGESGDVDRAKDELSFCFKSTRSSFTINMWEIDSMVKKGRRKTPGLSGNRKALEVNLPESSRKFITCIRKYLLFYLKLLEETGDICTLERAYVSLRADKRFALCIEDIVPVALGMYVKVLITSIRQVGIASSGDASSYEHILEKMFALFLEQGNLWPELCSLPEIQGPGISESNLFGYLHDHIITLERNVKVENLEAMNEKIRKRFKNPKLSNINIAKVCRHASTAWCRSLIINLALITPVPSESSTEIQTSSSLPVGLESNQLLCVDLQINELWGSTFEDSTHLKSLEPKWCPILSKINNIFVKRAAEVNWETANSMLRSSYNFFRESSCALPSGLNLYLVPYRLATGVNFQHRMDGVEILDFSLPRKLLLWAFTLVHGHFANISSVVKHCEEHLKPKLKKGAGNHGTQTLANLPAVITSPSVLGIGKDGSNYNGETDAEASPATPVASTSLPEGQTTISTIPFLSSGDTRQSSFHVPQLQQCSSNIAEKIGNGGDSDKG 1977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28815990 28827255 + Sed0028022.1 Sed05g1516 714142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1516 1977 PANTHER CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED 1 1971 IPR033053 GO:0005634(PANTHER)|GO:0006325(InterPro)|GO:0031491(PANTHER)
Sed05g1516 1977 SMART tpr_5 1329 1360 IPR019734 GO:0005515(InterPro)
Sed05g1516 1977 SMART tpr_5 117 150 IPR019734 GO:0005515(InterPro)
Sed05g1516 1977 SMART tpr_5 81 116 IPR019734 GO:0005515(InterPro)
Sed05g1516 1977 MobiDBLite consensus disorder prediction 330 363 - -
Sed05g1516 1977 SUPERFAMILY TPR-like 86 1369 IPR011990 GO:0005515(InterPro)
Sed05g1516 1977 Gene3D Tetratricopeptide repeat domain 27 199 IPR011990 GO:0005515(InterPro)
Sed05g1516 1977 Coils Coil 990 1017 - -
Sed05g1516 1977 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 13 198 - -
Sed05g1516 1977 MobiDBLite consensus disorder prediction 328 363 - -
Sed05g1516 1977 Coils Coil 39 59 - -
Sed05g1516 1977 MobiDBLite consensus disorder prediction 1906 1931 - -
Sed05g1516 1977 MobiDBLite consensus disorder prediction 1912 1931 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1516 K17613 - - csv:101222622 3364.32
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g39 . . . . . . . . . . Cma01g01445 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02317 Csa03g04535 Chy04g00168 . . . . . . . . . Sed05g1516 Cmo01g01499 . . . . . . Cpe02g00503 Bhi09g02556 Tan01g3903 Cmetu04g0903 . Hepe01g2205 Mch11g0755 . . . . . . . . . . . Cme04g00193
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009721 1 3 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 32