Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1519 ATGGGAAGTACGAGAGCTGTTCCTGTGCTGAAGGGAGCTTTATCACTTCCATCGCTAAATCCCCGAACCTTCATCGCTAGCAGCTTCAACACATTTCCTGTTTCCATTCGGAAATGGTCCACTGCGACACCCATTAGGGCTTCTCTTCAACCTCCCGATGTGCCCCGTTTAGCCCAAACCGCTCGAATTTCCCTCACTCCGGCTCAGGTTCATGAATTTGCTCCTAAAATCCGACAAGTTGTTCATTGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATTGAGCCTTCCATCAGAGCAGATACTGAAGGTGGCAATCAGCGAAGTGATGTTTCTGAAACATTTGAAAATAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAGAGTTCCTAAAGTTCTGAATAAGGAGTAG 432 46.99 MGSTRAVPVLKGALSLPSLNPRTFIASSFNTFPVSIRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEPSIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE 143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28828703 28833921 + Sed0009640.3 Sed05g1519 714145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1519 143 Gene3D - 46 91 - -
Sed05g1519 143 Pfam Glu-tRNAGln amidotransferase C subunit 65 136 IPR003837 GO:0006450(InterPro)
Sed05g1519 143 NCBIfam Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC 53 140 IPR003837 GO:0006450(InterPro)
Sed05g1519 143 SUPERFAMILY Glu-tRNAGln amidotransferase C subunit 49 139 IPR036113 GO:0006450(InterPro)
Sed05g1519 143 PANTHER UNCHARACTERIZED 22 143 IPR003837 GO:0006450(InterPro)|GO:0009507(PANTHER)|GO:0050567(PANTHER)|GO:0070681(PANTHER)
Sed05g1519 143 Hamap Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 48 141 IPR003837 GO:0006450(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1519 K02435 - - csv:101220103 214.157
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1517 Sed-Chr5:28828703 Sed05g1519 Sed-Chr5:28828703 1.10E-76 dispersed
Sed05g1519 Sed-Chr5:28828703 Sed12g1378 Sed-Chr12:11049792 1.60E-51 dispersed
Sed05g1518 Sed-Chr5:28828703 Sed05g1519 Sed-Chr5:28828703 1.10E-76 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g40 . . . . . . . . . . Cma01g01446 . Car09g00550 . . . . . . . . . . . . . . . . . . . . . . . Csa03g04534 Chy04g00169 . . . . . . . . . Sed05g1519 Cmo01g01500 . Cma09g00621 . . . . Cpe02g00502 Bhi09g02555 Tan01g3902 Cmetu04g3181 . . . . . . . . . . . . . . Cme04g00195
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008706 0 2 0 1 1 0 2 1 1 1 1 1 2 1 1 2 0 1 2 0 1 1 1 1 1 0 1 4 2 1 33