Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1523 ATGTCGGCTCCATCGACGCCCTCAAAGAGATCGCGTGATCGGACTTCTGTCAAGCCTACTGGGAAAGGAAAGCGGCAAAAGTCATCGGGTTCTCGTTCGCGAAATCAATCCTCGGAACTCTCTCCTGGTTATGGTGTCTTTCGTGTTCTCTTTCCTATTTCCAGAATTGGCAGCCTTATTGGTGGAGATGGGGGTGCTTTGTCTCGAATTCGCGAAGAAACAGGTGTAGAAGTCAGCGTAGAGGAAACTGTCCCTGGAAGTGATGAGAGAATTGTAGTAATTGGAGGCTCTAATCAAGAAACTGAAGTGAACCCTGAGCAAGATAATAAGGAAGACAAGATAAATTCTGAAGTCAAGGAGAACGATGGTGATGTTGCTGAGTGCGAAAAGAAAGAAGTTAAAGATTCTCCCCCTTTGGAAGATGCTAAACAGAAGGAGGTCCCACATTTGAAATTGCGAAAAGCCCTCTTTCTTGTTTTTGAGAAGATTTTCGATGAAGAACCAGAGGCGGATGGAACAGATGTTGAAGGCGATAAGCCGTCTACTACGTCTGTCTTAAGGTTGCTTGTTCTTTCTAGTCAAGTTGGGTGTCTATTGGGAAAGGGTGGCAGTATAGTCAAGCAAATGTCATCTGATAGTGGAGCGCAAATTAGAATTCTTCCCAGGGATAAACTTCCTCCCTGTGCAGGATCCAGTGATGAGTTAATCCAGATTAGTGGTGGAATTGGTGTGGCGAAGAAAGCTCTTGAACTTGTTTTTCAGCAGCTAATGGAAAATTCACCACGTGATAAAAGTACTATCACCTCAAGCATGATTGCACAGTCATCACATTCATCTGGACAGGCACTCCCTAGGGCTCATGAATATCCTCTGGGTAGTAGTTCTTTTAATACTCATGGAGGCCCTTACTCTATGCCTCGTGAAACCAGCATTGCTGGTCGAATCCAACTTTCTCCTGAATTGTTTTTCCGGTTATTATGCCCATCTGAGAGAGTTGGAAATGTGATTGGAAAAGGAGGAGTAGTAGTGAAGATTCTTCAGCAAGAGACAGGCTCTGACATCAAAGTTGTTGAAGGTGCCATGGACTCAGAAGACCGCATTATACTTGTAGCTGGTCCTGCGCACCCAGAAGATAGAATATCACCTGTGCAAGATGCTGTTTTTCGCATTCAGGCCAGGATTGCCAAGGCAGTACCAGACAACAAGGAGCAGAACTTGGTAGCTAGGTTTCTTGTTTCCTCCAATCAAATTGGTTGTCTTCTTGGGAAGGGCGGCTCCATCATAGCTGAAATGAGAAAGTCAACTGGTGCGTACATTCGTATTTTAGGAAAGGAGCAGGTTCCGAAGTGCGCTGGGGAAGATGAGGAAGTGATCCAGATAAATGGAGACCCTGAAGCAGTTCAAGATGCTATGTTGCAGATTACTACTCGGCTGAAGCATCACTTTTTCCGTGATACATTTCCATCAGTTAATAGTCATCTGAATCCTGCATTTATCGATCGACTTCCTTCATTTCCATCATATTTTGGAAGGAGGGAATTATCACCTCCAGGAATCTATTCAAACATAGGCCCCTCATTTAACAAGTTTGATACTCTTCCTTCACTTGGTGATTTGCGGGATGATCGGCCTCCTTTTCTTCATAGGCCAGGCGCTCCTCTGTTTTCTGATAGGAAACCATGGAACTCTCAGGGACTACTAGTTGAAGGAGGGGTTGGCTTGCCAGACTTTGCAGGAGCCCATCATAGAAGGATTGCTGGATTTAGAGGAGGAAATAGTCCAGCTATTATTACAAGCACCACTGTTGAAGTAGTTGTTCCTCGAAACCTTGTCCCTGTTATTTGTGGAGAGAATGGTGAATGTTTAAGACAGATTCGTCAGATTTCTGATGCAAAAATTACGATTACTGAGCCAATGCAAGGAGCAGTTGAAACTGTAATTATCATTTCTGGAACGCCTGAGCAGACCCATGCTGCCCAAAGTCTTATTCAAGCTTTTGTAATCAGTGAGACCGAGTCTTAG 2022 44.41 MSAPSTPSKRSRDRTSVKPTGKGKRQKSSGSRSRNQSSELSPGYGVFRVLFPISRIGSLIGGDGGALSRIREETGVEVSVEETVPGSDERIVVIGGSNQETEVNPEQDNKEDKINSEVKENDGDVAECEKKEVKDSPPLEDAKQKEVPHLKLRKALFLVFEKIFDEEPEADGTDVEGDKPSTTSVLRLLVLSSQVGCLLGKGGSIVKQMSSDSGAQIRILPRDKLPPCAGSSDELIQISGGIGVAKKALELVFQQLMENSPRDKSTITSSMIAQSSHSSGQALPRAHEYPLGSSSFNTHGGPYSMPRETSIAGRIQLSPELFFRLLCPSERVGNVIGKGGVVVKILQQETGSDIKVVEGAMDSEDRIILVAGPAHPEDRISPVQDAVFRIQARIAKAVPDNKEQNLVARFLVSSNQIGCLLGKGGSIIAEMRKSTGAYIRILGKEQVPKCAGEDEEVIQINGDPEAVQDAMLQITTRLKHHFFRDTFPSVNSHLNPAFIDRLPSFPSYFGRRELSPPGIYSNIGPSFNKFDTLPSLGDLRDDRPPFLHRPGAPLFSDRKPWNSQGLLVEGGVGLPDFAGAHHRRIAGFRGGNSPAIITSTTVEVVVPRNLVPVICGENGECLRQIRQISDAKITITEPMQGAVETVIIISGTPEQTHAAQSLIQAFVISETES 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28873568 28880624 + Sed0014189.1 Sed05g1523 714149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1523 673 ProSiteProfiles Type-1 KH domain profile. 183 252 - -
Sed05g1523 673 SMART kh_6 404 479 IPR004087 GO:0003676(InterPro)
Sed05g1523 673 SMART kh_6 319 395 IPR004087 GO:0003676(InterPro)
Sed05g1523 673 SMART kh_6 598 668 IPR004087 GO:0003676(InterPro)
Sed05g1523 673 SMART kh_6 43 115 IPR004087 GO:0003676(InterPro)
Sed05g1523 673 SMART kh_6 182 257 IPR004087 GO:0003676(InterPro)
Sed05g1523 673 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 45 100 IPR036612 GO:0003723(InterPro)
Sed05g1523 673 CDD KH-I_PEPPER_rpt2_like 407 478 - -
Sed05g1523 673 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 180 259 IPR036612 GO:0003723(InterPro)
Sed05g1523 673 CDD KH-I_PEPPER_rpt2_like 185 256 - -
Sed05g1523 673 MobiDBLite consensus disorder prediction 97 142 - -
Sed05g1523 673 MobiDBLite consensus disorder prediction 104 142 - -
Sed05g1523 673 ProSiteProfiles Type-1 KH domain profile. 405 474 - -
Sed05g1523 673 MobiDBLite consensus disorder prediction 1 44 - -
Sed05g1523 673 Pfam KH domain 408 474 IPR004088 GO:0003723(InterPro)
Sed05g1523 673 Pfam KH domain 47 100 IPR004088 GO:0003723(InterPro)
Sed05g1523 673 Pfam KH domain 601 664 IPR004088 GO:0003723(InterPro)
Sed05g1523 673 Pfam KH domain 324 374 IPR004088 GO:0003723(InterPro)
Sed05g1523 673 Pfam KH domain 186 252 IPR004088 GO:0003723(InterPro)
Sed05g1523 673 Gene3D K Homology domain, type 1 402 481 IPR036612 GO:0003723(InterPro)
Sed05g1523 673 Gene3D K Homology domain, type 1 181 260 IPR036612 GO:0003723(InterPro)
Sed05g1523 673 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 322 398 IPR036612 GO:0003723(InterPro)
Sed05g1523 673 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 400 485 IPR036612 GO:0003723(InterPro)
Sed05g1523 673 ProSiteProfiles Type-1 KH domain profile. 320 387 - -
Sed05g1523 673 ProSiteProfiles Type-1 KH domain profile. 599 663 - -
Sed05g1523 673 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 594 664 - GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
Sed05g1523 673 ProSiteProfiles Type-1 KH domain profile. 44 100 - -
Sed05g1523 673 Gene3D K Homology domain, type 1 597 670 IPR036612 GO:0003723(InterPro)
Sed05g1523 673 Gene3D K Homology domain, type 1 46 104 IPR036612 GO:0003723(InterPro)
Sed05g1523 673 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 599 668 IPR036612 GO:0003723(InterPro)
Sed05g1523 673 CDD KH-I_PEPPER_rpt1_like 320 388 - -
Sed05g1523 673 Gene3D K Homology domain, type 1 320 398 IPR036612 GO:0003723(InterPro)
Sed05g1523 673 MobiDBLite consensus disorder prediction 22 42 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1523 K21444 - - csv:101221201 1023.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1523 Sed-Chr5:28873568 Sed10g1895 Sed-Chr10:35762941 2.20E-79 dispersed
Sed12g1373 Sed-Chr12:10981210 Sed05g1523 Sed-Chr5:28873568 1.30E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35