Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1525 ATGGCCCTTCCTCTGTTTTTCTTCTTTTTCCTCTCTATTTTTTCTCCGGCGGCCGGCGCCGATCAATCTCTCTTTTTCGATCTGATTCGAAACGCGGTGGTCGCAAATTCTCTGCCCTCCGATTGGTATGGGAATTCGTTCTGCAATTTCACCGGCGTGAGATGCAACGAAAAGGGATTTGTGGTGGCGATTGATCTCTCCGGCGCGGCGGCCGCCGGGTGGTTTCCGGCGGAGGTTTGCTCTTACTTGCCGGAGTTGAGGGTGCTCCGCCTTGGCCGGAGTGGGTTTCGAGGGATGTTTCCACGTGGCGTTACGAACTGCTCTGTTTTGGAAGAATTGGATTTGACGTATCTGTATCTCGCTGGAACGTTGCCGGATTTCTCGCCGTTGAAAAGCTTGAAGATTCTCGAATTGTCGTACAACAATTTCACCGGCGACTTCCCGCTGTCGGTCTTCGGTTTGACCAATCTGGAACGGCTGAATTTCAACGAGGACAATAATTTCAACACGTGGCAGTTGCCGGAAAATATCTCCGGCTTGACGAAGCTGAAATCGATGGTGTTGACGACTTGTATGCTCGCCGGTTCGATCCCGGCGACGATTGGGAATTTGACGGCGCTCGTTGACCTCGAATTAAGCGGCAATTTCCTCGCCGGAAAAATACCGAAAGAAATCGGGAATTTGAAGAATTTGAGACAGTTGGAACTTTATTACAATTTATTAATCGGCGAAATCCCCGAAGAGATTGGGAATTTGACGGAGCTCGTTGACTTGGACATGTCGGTCAACAAGTTGACAGGAAAATTACCGGAGTCGATTTGTCGTCTTCCTAAACTTGAAGTTCTACAGTTTTACAACAATAGCTTAACAGGGGAAATTCCAGTTTCGATTTCGAATTCAACGACACTTACTATGCTGTCGCTTTACGACAATTACATGACCGGAAAAATTCCGATGAATTTGGGTACATTCTCGCCGATGCTGGTTCTCGACTTGTCGGAAAACCATTTCTACGGTCAATTACCGGCAGATGTCTGTCAACGAGGTAAACTACTATATTTTCTCGTATTGTCAAACAAATTCTCCGGTGAAATCCCGCCGACGTACGGTAAATGCCGGTCACTTTTACGGTTTCGGGTCAATTACAATCTTTTAGAAGGTCCGGTTCCGGCGGGGATTTTGGATCTTCCTCATGTTTCGATTATCGATTTAAGTACCAATAATTTGATCGGAGAAATACCCAATTCGTTTGAGAAGGCCAAAAATCTCTCGGAGCTGTTTATGCAGAATAATAAGATCGCCGGCGAGTTGCCGCCGGCGATATCCACGGCGACGAATTTGGTTAAGATTGATCTCAGCAACAATCTCTTGAGCGGTCCGATTCCTTCTGAAATTGGGAATCTCAAACGCCTGAATTTGTTGCTATTGCAAAAAAATCAGCTGAATTCATCCATACCCACTTCTCTTTCCGAGATGAAATCTTTGAATGTTCTTGATTTGTCCGATAACCGCCTCACCGGAAAAATCCCGGAAAGTCTCTGCAAATTGCTGCCGAATTCAATCAATTTCTCAAACAATCACCTCTCCGGTCCGATTCCCCTGTCTTTAGTCAAAGGCGGGTTGATCGAAAGCTTCTCCGGCAACCCGGGACTGTGCGTTTCGAGTCACTCCGACCCGAAATTCCCCATTTGTCCACAAAATTACGACAAAAAGAAACTGAATTCCATTTGGGCAATCGCCGTATCGGCGTTCATAATCTTCGTCGGCGCCGCCCTGTATCTAAAACGCCGATTCATCCGAGAAAAGACACTAACCGAACAGGACGAATCTTTGTCGTCTTCGTTTTTCTCGTACGATGTGAAAAGCTTTCACCGAATCAGCTTCGACCCACGTGAGATAATCGAATCAATGGTAGACAAGAACATCGTCGGCCACGGCGGCTCCGGCACGGTGTACAAAATCGAGTTAAACAGCGGCGAAATCGTGGCGGTGAAGCGACTGTGGAGCCGAAAAGGGAAGGATCCAACCGTTGATCAGGACCAACTGTATTTGGATAAGGAATTGAAAACGGAAGTGGAAACATTGGGGAGTATTAGGCACAAAAACATTGTGAAATTGTATTGCTATTTCTCGAGCTTGGATTGTAGCCTTTTGGTTTATGATTATATGCCAAATGGGAATTTGTGGGACGCTTTGCATAAGGGTTGGGTTCATTTGGATTGGCCCACCAGGCACCAGATTGCGCTCGGCATAGCTCAAGGCTTGGCTTATCTTCATCATGATTTGTTGCCTTCTATTATTCATCGCGATATCAAAACCACTAATATTTTGCTCGACATCAATTATCATCCCAAGGTTGCGGATTTTGGTATCGCTAAGGTTTTGCAAGCTAGGGCGGGTAAGGATTCCACCACCACTGTTATCGCTGGAACTTATGGTTATCTCGCTCCGGAGTACGCATATTCATCAAAAGCAACGACAAAGTGTGACGTATATAGCTTTGGGATCGTGTTAATGGAGCTAATAACGGGGAAGAAGCCAGTGGAAGCGGAGTTCGGAGAGAACAAGAACATCATATATTGGGTATCAAACAAAGTAGACACAAAGGAAGGAGCCATGGAAGTTTTGGACAAAAGAATTTCAAGTTCATTCAAAGATGAAATGATTCAAGTTCTAAGAATTGCAATTCGATGCACGTACAAGAATCCAGCCCTACGACCCACCATGAAGGAAGTGGTTCAACTATTGATTGAAGCTGATCCTTGCAAATTTGATTCTCAAAACAAATGCCCCAAAAACACCACCACCAAAATCAAGAACAACCCATTTGAGCTATGA 2838 45.63 MALPLFFFFFLSIFSPAAGADQSLFFDLIRNAVVANSLPSDWYGNSFCNFTGVRCNEKGFVVAIDLSGAAAAGWFPAEVCSYLPELRVLRLGRSGFRGMFPRGVTNCSVLEELDLTYLYLAGTLPDFSPLKSLKILELSYNNFTGDFPLSVFGLTNLERLNFNEDNNFNTWQLPENISGLTKLKSMVLTTCMLAGSIPATIGNLTALVDLELSGNFLAGKIPKEIGNLKNLRQLELYYNLLIGEIPEEIGNLTELVDLDMSVNKLTGKLPESICRLPKLEVLQFYNNSLTGEIPVSISNSTTLTMLSLYDNYMTGKIPMNLGTFSPMLVLDLSENHFYGQLPADVCQRGKLLYFLVLSNKFSGEIPPTYGKCRSLLRFRVNYNLLEGPVPAGILDLPHVSIIDLSTNNLIGEIPNSFEKAKNLSELFMQNNKIAGELPPAISTATNLVKIDLSNNLLSGPIPSEIGNLKRLNLLLLQKNQLNSSIPTSLSEMKSLNVLDLSDNRLTGKIPESLCKLLPNSINFSNNHLSGPIPLSLVKGGLIESFSGNPGLCVSSHSDPKFPICPQNYDKKKLNSIWAIAVSAFIIFVGAALYLKRRFIREKTLTEQDESLSSSFFSYDVKSFHRISFDPREIIESMVDKNIVGHGGSGTVYKIELNSGEIVAVKRLWSRKGKDPTVDQDQLYLDKELKTEVETLGSIRHKNIVKLYCYFSSLDCSLLVYDYMPNGNLWDALHKGWVHLDWPTRHQIALGIAQGLAYLHHDLLPSIIHRDIKTTNILLDINYHPKVADFGIAKVLQARAGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGIVLMELITGKKPVEAEFGENKNIIYWVSNKVDTKEGAMEVLDKRISSSFKDEMIQVLRIAIRCTYKNPALRPTMKEVVQLLIEADPCKFDSQNKCPKNTTTKIKNNPFEL 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28939541 28943294 - Sed0000007.1 Sed05g1525 714151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1525 945 ProSitePatterns Serine/Threonine protein kinases active-site signature. 766 778 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1525 945 Gene3D Ribonuclease Inhibitor 394 465 IPR032675 -
Sed05g1525 945 SUPERFAMILY Protein kinase-like (PK-like) 624 916 IPR011009 -
Sed05g1525 945 FunFam receptor protein-tyrosine kinase CEPR1 620 722 - -
Sed05g1525 945 ProSiteProfiles Protein kinase domain profile. 637 917 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1525 945 FunFam Leucine-rich repeat receptor-like protein kinase 170 272 - -
Sed05g1525 945 Gene3D Ribonuclease Inhibitor 24 169 IPR032675 -
Sed05g1525 945 Gene3D Ribonuclease Inhibitor 170 393 IPR032675 -
Sed05g1525 945 SUPERFAMILY L domain-like 44 295 - -
Sed05g1525 945 SMART serkin_6 637 923 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1525 945 ProSitePatterns Protein kinases ATP-binding region signature. 643 665 IPR017441 GO:0005524(InterPro)
Sed05g1525 945 FunFam leucine-rich repeat receptor-like protein kinase TDR 723 928 - -
Sed05g1525 945 Pfam Protein kinase domain 640 914 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1525 945 SMART LRR_typ_2 228 252 IPR003591 -
Sed05g1525 945 SMART LRR_typ_2 130 154 IPR003591 -
Sed05g1525 945 SMART LRR_typ_2 492 516 IPR003591 -
Sed05g1525 945 SMART LRR_typ_2 276 300 IPR003591 -
Sed05g1525 945 Gene3D Phosphorylase Kinase; domain 1 620 722 - -
Sed05g1525 945 SUPERFAMILY RNI-like 221 535 - -
Sed05g1525 945 FunFam Receptor protein-tyrosine kinase CEPR1 276 559 - -
Sed05g1525 945 Pfam Leucine Rich Repeat 230 252 IPR001611 GO:0005515(InterPro)
Sed05g1525 945 Pfam Leucine Rich Repeat 446 468 IPR001611 GO:0005515(InterPro)
Sed05g1525 945 Pfam Leucine Rich Repeat 494 516 IPR001611 GO:0005515(InterPro)
Sed05g1525 945 Pfam Leucine Rich Repeat 278 299 IPR001611 GO:0005515(InterPro)
Sed05g1525 945 Pfam Leucine Rich Repeat 255 276 IPR001611 GO:0005515(InterPro)
Sed05g1525 945 Pfam Leucine Rich Repeat 132 153 IPR001611 GO:0005515(InterPro)
Sed05g1525 945 Gene3D Ribonuclease Inhibitor 466 552 IPR032675 -
Sed05g1525 945 PANTHER LEUCINE RICH REPEAT KINASE 2 202 918 IPR051420 -
Sed05g1525 945 Gene3D Transferase(Phosphotransferase) domain 1 723 939 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1240 Sed-Chr1:9212252 Sed05g1525 Sed-Chr5:28939541 1.90E-46 dispersed
Sed03g1443 Sed-Chr3:9248057 Sed05g1525 Sed-Chr5:28939541 1.50E-166 dispersed
Sed05g1525 Sed-Chr5:28939541 Sed08g2241 Sed-Chr8:36104350 1.90E-81 dispersed
Sed08g0064 Sed-Chr8:361210 Sed05g1525 Sed-Chr5:28939541 2.30E-54 dispersed
Sed05g1525 Sed-Chr5:28939541 Sed05g1526 Sed-Chr5:28971845 5.80E-94 tandem
Sed03g0542 Sed-Chr3:3334781 Sed05g1525 Sed-Chr5:28939541 3.40E-73 transposed
Sed10g1929 Sed-Chr10:35970618 Sed05g1525 Sed-Chr5:28939541 8.70E-85 transposed
Sed10g0775 Sed-Chr10:5481805 Sed05g1525 Sed-Chr5:28939541 1.00E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79167 PF00069 Pkinase 2.10E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1525 - - - 0.0