Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1526 ATGTCGTTTCTACATTTCCTCTGTTTTCTCTCCCTCTTGAGCTTCCTCTCAGGGATTGAATCAGACGAGCGTCAAATCCTAACCAAACTCAAAACCAATCTCCAAAATTCAAACCCAAGTGTGTTTGCCAATTGGGGAGCCCAAACCCACATCTGCAATTTCACTGGAATCACCTGCAATTCAGACAATTTGGTCAAGGAAATTGACCTCTCCATAAGGGGTTTATCTGGGATTGTTCCATTTGATTCCATTTGTGAATTGAGTTCATTGGAGAAGCTGGCTTTTGGGGTTAACTTCTTGCAGAATGAAGCAACAGAGGATTTGAAAAACTGTGTCAAATTGAAGTATTTGGATCTTGGTAGCAACTCCTTCCATGGATCCTTCCCTGACATACATTTACTGAGTGAATTGCAGTATTTGTATCTGAATCTAAGTGGGTTTTCAGGGAAGTTTCCATGGAAATCACTTTCGAATTTGACTGATTTGATTGAGCTAAGCCTTGGGGATAACAATTTCGACAACACTACGTTTCCCATCGAGGTTACCAATTTGAAGAAACTTAATTCTCTTTACTTGACAAACTGCAGCTTAACAGGGGAAATTCCAAGATCTATTGGTAATCTCACAGAGCTTCGTAATTTGGAATTTGCAATCAATTATATCACCGGCGAGATTCCGGCGGAGATTGGGAACCTGAAGAATCTATGGCAGTTGGAGTTTTACATCAATCAAATCACAGGGAAATTTCCAGTGGAACTCAGAAACTTATCCAGACTTGAGAATTTTGATGCTTCATTGAATCAGATAACTGGGGATTTATCAGTGTTTAAGTATTTGACTAACCTGGTTACGCTGCAAATCTTTGATAACGAACTTTCCGGCCATATTCCGGTGGAGTTTGGCGAGTTCAAATCGCTTGTGAATCTCTCGCTGTACACGAACATGCTTACAGGTCCACTTCCGCAATCGATTGGTTCTTGGGCGAAGTTTGATTTCATCGATGTATCTGAAAATTTCTTGACGGGTTCGATTCCTCCCGATATGTGCAAGATGGGGGCGATGAAGGAGCTTCTCATGCTTCAGAACAATTTCTCCGGCGAGATTCCGGCGAGTTACGCTAATTGCTCCACATTAATCCGATTTAGAGTCAGTAAAAACTCGCTCACTGGCATTGTTCCGGCTGGAATTTGGGGATTACCGAACGCGACTATAATTGATCTTGAATCAAATCAATTGGAAGGTCCAATCACTTCCGATGTTGCAAATGCTGTGTCTCTCTCAGATCTTCACATCGGAAACAACCGATTATCAGGTCGATTGCCGTTGGAGATTTCTCAAGCCAGATCTCTTGCTTCGGTTGATTTGAGCAACAATCGATTCTCCGATGAGCTTCCGACGAAAATCGGTGACCTAAGAAATCTCAATCGCCTCGAATTACAGAACAACAAATTCTCCGGTTCGATTCCAGAGACGATTGGATCGTGTAAATTTTTTACTATCATCAATTTGGCAGGGAATTTGTTCTCTGGACAAATCCCCTCATCTCTAGGGTTTGTTCCTGTTCTAAACTCGCTAAATCTCTCCAACAACGATCTCTCAGGTGAAATCCCCTCAACATTTTCGCATCTGAAATTAAGCCTACTAGATCTATCAAACAACGAATTAATCGGTCCAGTACCTGAATCGCTCTTGAACGGAGCGTACAAAGAAAGCTTCGCCGGAAACCCTAGCCTCTGCAGCGAGTCCGATACCTTCTTACGGCGATGTTCGTCCAGATCCGACGCATCCAGAGGCGTCCGTGCGCTCATCATCTGCCTCGCCGTCGGATTGCTTCTCCTCAGCGTGGTGCTATGGTTCTTCAAAGCCTTGAAGTACAGCGAAAAGGCTCGAGATCGGTCGCTGAAAGAGGAATCCTGGGACATGAAATCGTTCCACGTGATGACGTTCACAGAGGACGAGATTCTGGACTCCATCAAAGACGAGAATCTCATCGGAAGAGGAGGATCCGGCAACGTCTACAAGGTGACCGTCGGGAACGGGAAGGAGCTCGCGGTGAAGCATATCTGGAACACAGATCCGTACGAGGCGAAGAAGAAGAAGAGGAATCATCGGAGCTCGTCGTCGGAGTTCGAGTCGGAGGTGAAGACGCTGAGCTCGATCCGCCATGTGAACGTGGTGAAGCTTTTCTGTAGCATTACGAGCGAGGTTTCGAGCTTGTTGGTGTACGAATTCATGCCGAACGGGAGCTTGTGGGACAGGCTTCACACGTCGAGAAAAATGGAGTTGGATTGGGAATCGAGATTCGAAATCGCCGTCGGAGCGGCCAAGGGTTTGGAGTATCTCCACCACGGCGGCGACCGGCCGATGATCCACCGGGATGTGAAGTCCAGTAATATTCTTTTGGACGAATCTCTCAAGCCCAGAATTGCTGATTTTGGGCTTGCAAAAATGCTTCACACAAGTGGGCTCAATGATACCACCCACACCCACACCCACGTCATTGCCGGCACCCCAGGCTACATCGCTCCAGAGTACGCTTACACTTACAAAGTTGACGAGAAGAGTGACGTGTATAGTTTTGGGGTTGTGTTGCTGGAGTTGGTGAGCGGAAAAAAGGCGATAGAAGCGGAGTTTGGAGAGAACAAGGACATTGTGCAATGGGTGTCGAACAATTTGAAGACGAGAGAGAGCGTGCTAAGCTTGGTAGATTCAAGAATTCCTGATGCGTTCAAAGAGGACGTTATAAAAGTTATGAGAATCGCAATCTTGTGCACAGCTAGGGTTCCGACATCAAGACCTACCATGAGAAGTGTGGTTCAAATGCTTGAAGAAGCTCGACCGTGTCGATTGGTTGGGATTGTGGTTAACAAAGATGGTGGGAGTGCTAAAAAGGAATTATTGGTAGATATCAACAAGATTAGACTCTAA 2928 45.56 MSFLHFLCFLSLLSFLSGIESDERQILTKLKTNLQNSNPSVFANWGAQTHICNFTGITCNSDNLVKEIDLSIRGLSGIVPFDSICELSSLEKLAFGVNFLQNEATEDLKNCVKLKYLDLGSNSFHGSFPDIHLLSELQYLYLNLSGFSGKFPWKSLSNLTDLIELSLGDNNFDNTTFPIEVTNLKKLNSLYLTNCSLTGEIPRSIGNLTELRNLEFAINYITGEIPAEIGNLKNLWQLEFYINQITGKFPVELRNLSRLENFDASLNQITGDLSVFKYLTNLVTLQIFDNELSGHIPVEFGEFKSLVNLSLYTNMLTGPLPQSIGSWAKFDFIDVSENFLTGSIPPDMCKMGAMKELLMLQNNFSGEIPASYANCSTLIRFRVSKNSLTGIVPAGIWGLPNATIIDLESNQLEGPITSDVANAVSLSDLHIGNNRLSGRLPLEISQARSLASVDLSNNRFSDELPTKIGDLRNLNRLELQNNKFSGSIPETIGSCKFFTIINLAGNLFSGQIPSSLGFVPVLNSLNLSNNDLSGEIPSTFSHLKLSLLDLSNNELIGPVPESLLNGAYKESFAGNPSLCSESDTFLRRCSSRSDASRGVRALIICLAVGLLLLSVVLWFFKALKYSEKARDRSLKEESWDMKSFHVMTFTEDEILDSIKDENLIGRGGSGNVYKVTVGNGKELAVKHIWNTDPYEAKKKKRNHRSSSSEFESEVKTLSSIRHVNVVKLFCSITSEVSSLLVYEFMPNGSLWDRLHTSRKMELDWESRFEIAVGAAKGLEYLHHGGDRPMIHRDVKSSNILLDESLKPRIADFGLAKMLHTSGLNDTTHTHTHVIAGTPGYIAPEYAYTYKVDEKSDVYSFGVVLLELVSGKKAIEAEFGENKDIVQWVSNNLKTRESVLSLVDSRIPDAFKEDVIKVMRIAILCTARVPTSRPTMRSVVQMLEEARPCRLVGIVVNKDGGSAKKELLVDINKIRL 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28971845 28975534 - Sed0002140.1 Sed05g1526 714152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1526 975 Gene3D Transferase(Phosphotransferase) domain 1 745 950 - -
Sed05g1526 975 FunFam Inactive leucine-rich repeat receptor-like protein kinase 369 465 - -
Sed05g1526 975 SUPERFAMILY L domain-like 333 582 - -
Sed05g1526 975 ProSitePatterns Protein kinases ATP-binding region signature. 664 686 IPR017441 GO:0005524(InterPro)
Sed05g1526 975 Gene3D Ribonuclease Inhibitor 177 276 IPR032675 -
Sed05g1526 975 Gene3D Ribonuclease Inhibitor 277 597 IPR032675 -
Sed05g1526 975 Pfam Protein kinase domain 660 940 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1526 975 SUPERFAMILY L domain-like 23 186 - -
Sed05g1526 975 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 745 957 - -
Sed05g1526 975 ProSiteProfiles Protein kinase domain profile. 658 946 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1526 975 SUPERFAMILY L domain-like 155 414 - -
Sed05g1526 975 Gene3D Phosphorylase Kinase; domain 1 641 744 - -
Sed05g1526 975 Pfam Leucine Rich Repeat 522 543 IPR001611 GO:0005515(InterPro)
Sed05g1526 975 Pfam Leucine Rich Repeat 186 208 IPR001611 GO:0005515(InterPro)
Sed05g1526 975 Pfam Leucine Rich Repeat 449 471 IPR001611 GO:0005515(InterPro)
Sed05g1526 975 Pfam Leucine Rich Repeat 473 495 IPR001611 GO:0005515(InterPro)
Sed05g1526 975 Gene3D Ribonuclease Inhibitor 20 176 IPR032675 -
Sed05g1526 975 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 276 944 IPR051716 -
Sed05g1526 975 SUPERFAMILY Protein kinase-like (PK-like) 647 943 IPR011009 -
Sed05g1526 975 FunFam Receptor-like protein kinase 7 104 353 - -
Sed05g1526 975 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 466 586 - -
Sed05g1526 975 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1526 975 Pfam Leucine rich repeat N-terminal domain 21 60 IPR013210 -
Sed05g1526 975 SMART serkin_6 658 942 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1526 Sed-Chr5:28971845 Sed10g1929 Sed-Chr10:35970618 1.00E-149 dispersed
Sed05g1525 Sed-Chr5:28939541 Sed05g1526 Sed-Chr5:28971845 5.80E-94 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79168 PF00069 Pkinase 3.40E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1526 - - - 0.0