Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1530 ATGGAGTTGAATGAGAATTATTTGTTGGATGAACTTTTAGCTCTGAGAAGAGAAATGAATTGGGAATTAGCAATGCCCACAGAAATGAATTATGATTGCTGGAATTTTGATGGCTCTGATTCTTCTTTCCCAATTGATCCCCAAAATTTTGATTATAGTCTTCTTGGCGGGCAAGGGCAGTTTTCTTTGCCCGCCGGGCAGTTCGCGGCGGCAGCGACGGTAGCAGCGAGTACTGGCGACTCGATGTCGTACAGCACGACGACACCGAGTAGCTTCGAGTATGCGATTACGAGTATGGAAGAGGAAGAGCTTGGGATTTTGGAGGATGAGATTCATAATCTTGAAGTTCAGGCAAGTTGCAAATTTGAGCCGGTTCAATCTCCGGTTTTCAATTACTCGGTTGGCACGTCCGATTTTGGGGAAAAGATCGGCGGCTCGGCGAGGAAGAAACTCCAGGGGCAGCCGTCGAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGGCTCAATGATCGGCTCTCCATGCTCAGATCTATTGTTCCTAAAATTAGCAAGATGGATAGAACGGCGATTCTAGCGGATGCAATTGAGTATGTGAAAGAACTGCTAGAAAAAATCAACCATTTGGAAGGGGAGTTTGAAATGGAAAATCCCACTAAATTGGAGTCCATGGGGATTTTGAGGAATGTGAAACCAAATGAATATTTGGTCAGAAATTCACCCAAGTTAATTTTGCAGTTTAATGTGGAAAGAAGAGAAGAGGATACTCGGATTGAGATTTGCTGTGCAGCTAAGCCTGGATTATTGTTATCAACAATGCAAACTCTTGAGGATTTGGGGCTTGATATTCAGCAATGTGTCATTAGCTGTTTTAATGACTTTGCTATCCAAGCTTCTTGCTCTCAGGGAATGGAGCAGAGAACAATTGTGAGCACAGAAGAAGTAAAGCAAGCGTTGTTTGAAAATGCTGGATATGGAGGAAGATGCCCTTAG 993 44.31 MELNENYLLDELLALRREMNWELAMPTEMNYDCWNFDGSDSSFPIDPQNFDYSLLGGQGQFSLPAGQFAAAATVAASTGDSMSYSTTTPSSFEYAITSMEEEELGILEDEIHNLEVQASCKFEPVQSPVFNYSVGTSDFGEKIGGSARKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYVKELLEKINHLEGEFEMENPTKLESMGILRNVKPNEYLVRNSPKLILQFNVERREEDTRIEICCAAKPGLLLSTMQTLEDLGLDIQQCVISCFNDFAIQASCSQGMEQRTIVSTEEVKQALFENAGYGGRCP 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29050659 29055103 - Sed0009400.2 Sed05g1530 714156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1530 330 SMART finulus 159 208 IPR011598 GO:0046983(InterPro)
Sed05g1530 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 218 IPR036638 GO:0046983(InterPro)
Sed05g1530 330 Gene3D - 147 217 IPR036638 GO:0046983(InterPro)
Sed05g1530 330 Coils Coil 97 117 - -
Sed05g1530 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983(InterPro)
Sed05g1530 330 Pfam Plant bHLH transcription factor, ACT-like domain 248 319 IPR054502 -
Sed05g1530 330 CDD ACT_UUR-ACR-like 256 319 - -
Sed05g1530 330 Pfam Helix-loop-helix DNA-binding domain 160 202 IPR011598 GO:0046983(InterPro)
Sed05g1530 330 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 138 325 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sed05g1530 330 Coils Coil 192 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1530 Sed-Chr5:29050659 Sed10g0797 Sed-Chr10:5701655 3.70E-64 dispersed
Sed05g1529 Sed-Chr5:29050659 Sed05g1530 Sed-Chr5:29050659 7.40E-182 tandem
Sed05g1530 Sed-Chr5:29050659 Sed05g1531 Sed-Chr5:29050659 1.40E-132 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38536 PF00010 HLH 7.10E-10 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1530 - - - 0.0