Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1531 ATGGAGTTGAATGAGAATTATTTGTTGGATGAACTTTTAGCTCTGAGAAGAGAAATGAATTGGGAATTAGCAATGCCCACAGAAATGAATTATGATTGCTGGAATTTTGATGGCTCTGATTCTTCTTTCCCAATTGATCCCCAAAATTTTGATTATAGTCTTCTTGGCGGGCAAGGGCAGTTTTCTTTGCCCGCCGGGCAGTTCGCGGCGGCAGCGACGGTAGCAGCGAGTACTGGCGACTCGATGTCGTACAGCACGACGACACCGAGTAGCTTCGAGTATGCGATTACGAGTATGGAAGAGGAAGAGCTTGGGATTTTGGAGGATGAGATTCATAATCTTGAAGTTCAGGCAAGTTGCAAATTTGAGCCGGTTCAATCTCCGGTTTTCAATTACTCGGTTGGCACGTCCGATTTTGGGGAAAAGATCGGCGGCTCGGCGAGGAAGAAACTCCAGGGGCAGCCGTCGAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGGCTCAATGATCGGCTCTCCATGCTCAGATCTATTGTTCCTAAAATTAGCAAGATGGATAGAACGGCGATTCTAGCGGATGCAATTGAGTATGTGAAAGAACTGCTAGAAAAAATCAACCATTTGGAAGGGGAGTTTGAAATGGAAAATCCCACTAAATTGGAGTCCATGGGGATTTTGAGGAATGTGAAACCAAATGAATATTTGGTCAGAAATTCACCCAAGGTAAAATAA 735 45.44 MELNENYLLDELLALRREMNWELAMPTEMNYDCWNFDGSDSSFPIDPQNFDYSLLGGQGQFSLPAGQFAAAATVAASTGDSMSYSTTTPSSFEYAITSMEEEELGILEDEIHNLEVQASCKFEPVQSPVFNYSVGTSDFGEKIGGSARKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYVKELLEKINHLEGEFEMENPTKLESMGILRNVKPNEYLVRNSPKVK 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29050659 29055103 - Sed0009400.3 Sed05g1531 714157

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1531 244 Gene3D - 147 217 IPR036638 GO:0046983(InterPro)
Sed05g1531 244 SMART finulus 159 208 IPR011598 GO:0046983(InterPro)
Sed05g1531 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 218 IPR036638 GO:0046983(InterPro)
Sed05g1531 244 Coils Coil 97 117 - -
Sed05g1531 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983(InterPro)
Sed05g1531 244 Coils Coil 192 212 - -
Sed05g1531 244 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 138 220 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sed05g1531 244 Pfam Helix-loop-helix DNA-binding domain 160 202 IPR011598 GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1531 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1529 Sed-Chr5:29050659 Sed05g1531 Sed-Chr5:29050659 4.10E-132 dispersed
Sed05g1531 Sed-Chr5:29050659 Sed10g0797 Sed-Chr10:5701655 2.20E-29 dispersed
Sed05g1530 Sed-Chr5:29050659 Sed05g1531 Sed-Chr5:29050659 1.40E-132 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g559 Blo01g01790 Blo12g00741 . Bda03g00446 . . Bma04g00423 . Cmo05g00589 . Cma01g01461 Cma09g00606 . . . Cpe06g00467 . Bhi04g00904 . . . Hepe10g0404 . Lcy13g1454 Cla08g01184 Cam08g1649 Cec08g1223 Cco08g1344 Clacu08g1345 . Cre08g1131 . Cone9ag1430 . . Lsi04g02300 Csa03g04520 Chy04g00184 Cme03g01779 Blo17g00087 Blo18g00096 . . Bpe02g01167 Bpe14g00498 Bma01g01364 Bma02g00102 Sed05g1531 Cmo01g01513 Cmo09g00594 . Cma05g00563 Car05g00509 Car09g00538 Cpe11g00494 Cpe02g00490 Bhi09g02536 Tan01g3883 Cmetu04g1590 . Hepe01g2191 Mch11g0736 . Cla11g01450 Cam11g1503 Cec11g1540 Cco11g1535 Clacu11g1668 Cmu11g1484 Cre11g1904 Lsi08g01047 Csa02g02231 Chy03g01286 Cme04g00212
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001186 1 3 3 3 1 1 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 3 2 2 2 6 3 3 75
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38537 PF00010 HLH 4.50E-10 No_clan Sed TF