Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1536 ATGAAACTCTATAACACTGGTTTTTGTTTTAATCTACTTATATTTTACTCGTTTTCTTGCGGGTATTATACAGATATGGATGCTACTGAGGGGCTAAGTTTGTATCCATCGCACCGTACTAAAACTATTCATCTGGTGAGGCATGCCCAGGGATTTCATAATGTGGCAGGAGATAAGGACTTTAACGCATATCTATCTTATGATTACTTTGATGCTCAACTTACCCCACTTGGATGGAAACAGGTTGATAATCTTCGGAAACATGTACAATCATGTGGACTTTCTAAGAGAATTGAGCTAGTCATCACTTCCCCTTTGTTCAGGACTATGCAAACAGCAGTTGGAGCCTTTGGTGGTGATGGATATTCAAATGGTATAACTGTTCCTCCATTAATGGTAGCTAATGCAGGAGGTAGCAACCGCCCTGCAATTTCAAGTTTGAATTGCCCGCCATTTTTGGCAGTAGAGCTTTGTCGGGAATCTATGGATATTCATCCCTGTGACAAGAGAGGAAGCATTAGCGAGTATCGGTCTCTTTTCCCTGCTATTGATTTTTCAATGATTGAACATGATGACGATATTTTGTGGAAGCCAGACATCAAAGAGACCAAAGAAGAAGTAGCAGTTAGGGGACTAAAATTTCTTAAATGGCTTTGGACCCGAAAGGAGAAGGAGATTGCAGTTGTCAGCCACAGTGGATTCATATTTCGTGCAATGAGTGCATTTGGAAATGATTGCCATCCATCTATTAAGGCTGAAATCTGCAACCATTTTGCAAACTGTGAGCTTCGTTCCATTGTTCTTATTGATAGGAGCAGATTTGTTGAGTCCGAACCCTCGACGACCAATTTCCCGGGAGGATTACCGCTAGAGCTCGATCTTCCCAACGATGTTGCAGCTGAAAAGCATCTGGAGAAGGGAGTTGCAAATGAAGATGTGGCTTGA 945 41.8 MKLYNTGFCFNLLIFYSFSCGYYTDMDATEGLSLYPSHRTKTIHLVRHAQGFHNVAGDKDFNAYLSYDYFDAQLTPLGWKQVDNLRKHVQSCGLSKRIELVITSPLFRTMQTAVGAFGGDGYSNGITVPPLMVANAGGSNRPAISSLNCPPFLAVELCRESMDIHPCDKRGSISEYRSLFPAIDFSMIEHDDDILWKPDIKETKEEVAVRGLKFLKWLWTRKEKEIAVVSHSGFIFRAMSAFGNDCHPSIKAEICNHFANCELRSIVLIDRSRFVESEPSTTNFPGGLPLELDLPNDVAAEKHLEKGVANEDVA 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29097080 29106703 + Sed0025414.2 Sed05g1536 714162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1536 314 SMART PGAM_5 42 238 IPR013078 -
Sed05g1536 314 CDD HP_PGM_like 42 113 IPR013078 -
Sed05g1536 314 Gene3D - 41 284 IPR029033 -
Sed05g1536 314 FunFam Phosphoglycerate mutase-like protein 1 37 285 - -
Sed05g1536 314 Pfam Histidine phosphatase superfamily (branch 1) 43 114 IPR013078 -
Sed05g1536 314 SUPERFAMILY Phosphoglycerate mutase-like 40 271 IPR029033 -
Sed05g1536 314 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 37 268 IPR050275 GO:0005737(PANTHER)|GO:0016791(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1536 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1534 Sed-Chr5:29087933 Sed05g1536 Sed-Chr5:29097080 3.50E-98 dispersed
Sed05g1536 Sed-Chr5:29097080 Sed05g1538 Sed-Chr5:29110514 1.10E-155 dispersed
Sed05g1535 Sed-Chr5:29097080 Sed05g1536 Sed-Chr5:29097080 1.50E-170 tandem
Sed05g1536 Sed-Chr5:29097080 Sed05g1537 Sed-Chr5:29110514 1.20E-144 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g558 . . . . Bpe02g00151 . . Bma01g02575 . . . Cma09g00605 . . . Cpe06g00466 . . . . . . . . . . . . . . . Cone4ag1277 Cone7ag0874 . . Lsi04g02298 Csa03g04517 Chy04g00186 . . . Bda11g00812 . . Bpe05g00448 . . Sed05g1536 . Cmo09g00593 . . . Car09g00537 . . Bhi09g02533 Tan01g3880 Cmetu04g2852 . Hepe01g2188 Mch11g0734 . Cla11g01447 Cam11g1500 Cec11g1537 Cco11g1533 Clacu11g1664 Cmu11g1480 Cre11g1900 . . . Cme04g00216
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000410 2 5 1 2 2 0 4 4 2 4 2 4 4 4 4 4 4 4 3 4 4 3 3 3 3 2 5 16 9 2 113