Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1544 ATGGGGAGAGGGAAGATTGTGATTAGGAGGATCGATGATTCGACGAGCAGACAAGTGACTTTCTCGAAGCGGAGGAGCGGACTGCTGAAGAAGGCGAAAGAACTGGCGATCCTTTGCGACGCCGATGTCGGAGTTATCGTCTTCTCCAGCACCAGCAAGCTTTATGAATTCTCCAGCACCAGCATGAAAACACTGATAGAACGATATAACAAAACAAAAGAGGATCACCAACAGCTTGGGGTCTCGACTTCTGAAGTGAAGTATTGGCAAAGGGAAGCAGCAATGTTACGGCAGCAACTTCAGAGCTTACATGAAAGTCATCGGCATATGATGGGTGAAGAGCTGACTGGGCTGAGCATCAAAGACCTACAAAATCTAGAAAATCAACTGGAGACAAGTCTTCGTGGTGTTCGCATGAAGAAGGACCAAATCTTAATGGATGAGATACAAGACCTAAACATAAAGGGAAACCTAATTCACCAAGACAATATGGAACTTCATAAGAAGGTAAAACTAATTCGTCAAGAAAACCTGGAATTATACAAAAAGGTCTATGGAACAAATGATGCCAATGAAGCACACATAAGCGATCTTACAAACAGACTGGGTGTCGTAGAGGATGCAGGTATACCTGTCAGCCTTCAACTCCGCCAGCCACAGCAACAAGACCATGAGGCACCCGAAAGAGCTACAAAACTGGGCAGACTACGACTACGCTAG 720 45.28 MGRGKIVIRRIDDSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIVFSSTSKLYEFSSTSMKTLIERYNKTKEDHQQLGVSTSEVKYWQREAAMLRQQLQSLHESHRHMMGEELTGLSIKDLQNLENQLETSLRGVRMKKDQILMDEIQDLNIKGNLIHQDNMELHKKVKLIRQENLELYKKVYGTNDANEAHISDLTNRLGVVEDAGIPVSLQLRQPQQQDHEAPERATKLGRLRLR 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29152538 29170385 - Sed0016651.1 Sed05g1544 714170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1544 239 MobiDBLite consensus disorder prediction 217 239 - -
Sed05g1544 239 Pfam K-box region 83 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed05g1544 239 Coils Coil 123 143 - -
Sed05g1544 239 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g1544 239 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g1544 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 205 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed05g1544 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g1544 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g1544 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g1544 239 MobiDBLite consensus disorder prediction 222 239 - -
Sed05g1544 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g1544 239 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed05g1544 239 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed05g1544 239 Gene3D - 13 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g1544 239 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Sed05g1544 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g1544 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2522 Sed-Chr4:38112232 Sed05g1544 Sed-Chr5:29152538 3.10E-33 dispersed
Sed05g1544 Sed-Chr5:29152538 Sed13g0384 Sed-Chr13:2566179 7.40E-62 dispersed
Sed10g0803 Sed-Chr10:5806069 Sed05g1544 Sed-Chr5:29152538 4.70E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38538 PF01486 K-box 1.20E-26 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1544 K09264 - csv:101203545 401.749