Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1549 ATGGGAGTGCGATTGCATATACGAGATCATCATGTGGTAGTGGATAATGGAATACTGCAACTAACTTTATCAAAACCAGATGGAATTATCACTGGGATAAGATATAATGGTGTTGAAAATCTGCTTGAAGTTCTCAACCCTGAATCTAACAGAGGCTACTGGGACCTTGTTTGGAATTCTCCGGGAAGCAAGGGAATATTTGACGTGATTAAAGGATCAAGTTTTAGGGTTATAGTTGAAAATGAGGAACAGGTTGAGCTTTCTTTTACAAGGATGTGGGATCCCTCCCTTGAGGGCAAGTTTGTTCCTTTGAATATCGACAAAAGGTTCATTGTATTACGCGGTTCCTCAGGATTTTACTCATATGCTATTTATGAGCACTTGAAGGATTGGCCTGATTTTGATATTGGTGAAACTAGGATCACTTTTAAACTCAGAAAAGACAAGTTTCAGTACATGGCTGTAGCTGACAACAGGCAGAGATTGATGCCATTGCCCGATGATCGGTTACCTGGAAGATGCCAAACTTTGGCCTATCCTGAAGCAGTCTTGCTTACCAATCCCAAGAACCCTGAACTCAAGGGTGAGGTGGATGACAAATATCAATACTCGTGTGAAAACAAAGACTTAAAGGTCCATGGATGGATAAGCACCAATCCGCCTATTGGCTTTTGGCAGATTACGCCCAGCGATGAATTTCGGTCTGGCGGGCCGCATAAGCAAAATCTAACATCCCATGTGGGACCAACAACCCTTGCTATATTTCTTAGTACTCATTATGCTGGACAAGATTTGGTGCCAAAATTTAGAGCTGGTGAGCCATGGAAGAAAGTTTTTGGCCCTGTTTTTCTTTATCTTAATTCCACTTCAGTTGGAGATGATCCATTTTGGTTATGGGAGGATGCTAAAATACAGATGATGACGGAAGTCCAAAGTTGGCCGTATAGTTTCCCTGCATCTGAGGATTTCCCAAAAGCAGATCAACGGGGTACGGTTAGCGGTAGGCTGCTGGTTTTCGACAGGTATATTAGTCAAAACTATCTTCCAGCAAGTGGAGCCTTTGTCGGATTGTCTGCACCAGGAGAAGTAGGTTCATGGCAGAGAGAATGCAAGGGATATCAATTCTGGACTAGAGCAGATGATGGGGGTTATTTTACCATCAGCCACATACACACTGGTGAGTATAATCTATATGCATGGGTCCCCGGCTTCGTTGGAGATTACTGTTGTGATGCCCTCGTCAACGTAAACGAAGGATCTAGCATTGAAATGGGCGATCTTGTATACGGACCTCCAAGAGATGGGCCTACACTATGGGAAATAGGCGTTCCCGATCGTTCTGCATCCGAGTTCTATGTTCCTGATCCTAATCCAATGCATATTAATAAGCTCTTTGTCAACCATCCTGACAGGTTTCGGCAATATGGGTTATGGGATAGATACGCTGAATTATACCCGAACGAGGATTTAGTATACACGGTTGGCACAAGTGATTATCGTAAAGATTGGTTCTTTGCTCAGGTCCCTAGGAAGACAAACAACAATTCACATCAAGGAACTACTTGGCAAATCAAATTCAAACTTGATAATGTGAATCACAAGTGTATGTATACCTTAAGAGTCGCAATTGCGTCTGCAACTCTTGCAGAATTGCAGGTCCGGGTTAATGATTTGACATCGAAGCGACCTTTGTTTACGAGCGGGTTGATAGGGAGGGACAATTCAATTGCAAGACATGGAATTCATGGAATTTATCGGCTATACAGCGTGGGGATTGCAGGCACTCATCTTGTTGAAGGAGAGAACACAATATTCTTCACTCAGCCACGCTGCACCAGCCCTTTCCAGGGTATCATGTATGATTATATCCGTCTGGAAGGTCCTCCAACAAAGTGA 1896 43.25 MGVRLHIRDHHVVVDNGILQLTLSKPDGIITGIRYNGVENLLEVLNPESNRGYWDLVWNSPGSKGIFDVIKGSSFRVIVENEEQVELSFTRMWDPSLEGKFVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRLMPLPDDRLPGRCQTLAYPEAVLLTNPKNPELKGEVDDKYQYSCENKDLKVHGWISTNPPIGFWQITPSDEFRSGGPHKQNLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFWLWEDAKIQMMTEVQSWPYSFPASEDFPKADQRGTVSGRLLVFDRYISQNYLPASGAFVGLSAPGEVGSWQRECKGYQFWTRADDGGYFTISHIHTGEYNLYAWVPGFVGDYCCDALVNVNEGSSIEMGDLVYGPPRDGPTLWEIGVPDRSASEFYVPDPNPMHINKLFVNHPDRFRQYGLWDRYAELYPNEDLVYTVGTSDYRKDWFFAQVPRKTNNNSHQGTTWQIKFKLDNVNHKCMYTLRVAIASATLAELQVRVNDLTSKRPLFTSGLIGRDNSIARHGIHGIYRLYSVGIAGTHLVEGENTIFFTQPRCTSPFQGIMYDYIRLEGPPTK 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29209913 29218072 + Sed0006117.1 Sed05g1549 714175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1549 631 CDD RGL4_C 439 626 - -
Sed05g1549 631 Pfam Rhamnogalacturonate lyase family 3 197 IPR010325 -
Sed05g1549 631 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 629 IPR051850 -
Sed05g1549 631 SUPERFAMILY Starch-binding domain-like 325 422 IPR013784 GO:0030246(InterPro)
Sed05g1549 631 CDD RGL4_N 5 290 - -
Sed05g1549 631 FunFam Rhamnogalacturonate lyase B 325 424 - -
Sed05g1549 631 Gene3D - 4 301 IPR014718 GO:0030246(InterPro)
Sed05g1549 631 Gene3D - 325 424 - -
Sed05g1549 631 Pfam Polysaccharide lyase family 4, domain III 437 625 IPR029411 -
Sed05g1549 631 Pfam Polysaccharide lyase family 4, domain II 351 422 IPR029413 -
Sed05g1549 631 CDD RGL4_M 328 427 IPR029413 -
Sed05g1549 631 Gene3D - 435 626 - -
Sed05g1549 631 SUPERFAMILY Galactose-binding domain-like 434 626 IPR008979 -
Sed05g1549 631 SUPERFAMILY Galactose mutarotase-like 9 293 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1549 Sed-Chr5:29209913 Sed13g1527 Sed-Chr13:20423355 3.20E-266 dispersed
Sed05g1549 Sed-Chr5:29209913 Sed05g1550 Sed-Chr5:29220105 2.40E-261 tandem
Sed14g1343 Sed-Chr14:22277037 Sed05g1549 Sed-Chr5:29209913 8.70E-203 transposed
Sed10g0804 Sed-Chr10:5819657 Sed05g1549 Sed-Chr5:29209913 1.00E-209 wgd
Sed13g1525 Sed-Chr13:20410113 Sed05g1549 Sed-Chr5:29209913 1.50E-256 wgd
Sed04g0189 Sed-Chr4:1340280 Sed05g1549 Sed-Chr5:29209913 2.20E-278 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1549 K18195 - csv:101203947 1230.31