Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1551 ATGGCGAGCGAGATACTCCAATTGGATATTCAGGATCATCATGTTGTTATGGACAATGGCATATTGCAAGTGACATTGTCCAAGCCAGATGGAAATGTTACTGGGATCAGATACAACAACATTGACAATATTTTAGAAGTTGATGATAAGGAAACTCATAGAGGATACTGGGACCTTGTGTGGAACTCAGGAACTTCAGGAACAACAGGAACGTTCGACGAGATGAGAGGAGAAGAATTTGAAGTGATCATAGAAAATGAAGAACAGATAGAGCTCTCATTTAAAAGGAATTATTCATTGAAGGACATGGAAGTTCCCTTAAACATAGACAAAAGATTCATAATGCTTAGAAACTCCTCTGGAATCTACTCCTATTCCATTTTTGAGCATTTGAAGGAATGGCCACCATTCAACCTTCCTCAAACTAGGATAGTGTTTAAGCTAAGAAAAGACAAGTTTCATTATATGGCAATAGCAGATAACAGAAAGAGATTAATGCCACTTCCTGAGGATAGACTTCGCCCCAGAGGCAAACCTTTGGACTTTCCTGAGGCTGTATTGCTTGTCAACCCTAAAGAACGTCCTCTCTTCAAGGGAGAGATGTTTCTTAGCGCTCACTATGCAGGAGAGGACTTGGTGTTGAAGCTCAATCCTGACGAGCCATGGAAGAAAGTTTTTGGTCCTGTCTTTTTCTATCTTAACTCTGCTTCTGATGGAGCTGATCCACTTTCCTTATGGGAAGATGCTAAAACTCAGATGAGGAAGGAAGTTGAAAGTTGGCCGTATTCTTTTCCTGCTTCTGAGGATTTCCCTCCACCAAACCAACGTGGTAGATTGGCTGGAAAATTATTTGTTCTTGACAGGTATGTTAACCAAGAGCAAATACCAGCAACCGACGCGTACGTTGGAGTGGCAGCACCAGGAGACGCGGGATCATGGCAGACAGAAAACAAGGGCTACCAGTTTTGGACCAAAACAGCTGCAGATGGGTCATTTAGCATTGAAAATGTACGCATTGGTGACTACAATCTTTATGCTTGGGTTTCTGGTTTCATTGGCGATTACCGTTACGATGTTGTCGTTAGCATCTCTGCAGGTAGTGATATGGACGTAGGTGATCTTGTATATGAGCCGCCTAGGAGTGGGCCAACGTTGTGGGAAATAGGAATTCCTGATCGCTCTGCTGCTGAGTTCTATATTCCTGATCCTGATCCAAAGTATATTAACAATTTGTATGTCGATCATCCAGATAGATTTAGGCAATATGGATTGTGGGAAAGATATGGAGAGTTATATCCTGATGCAGACCTAATATATACAGTTGGTGTCAGTGATTACACAAAAGATTGGTTCTTTGCCCATGTTACCAGAACGAGAAATGATGGATCCCATGAAGCAACGACGTGGGAAATCAAGTTTAGAGTTGATAATAATATAGATAAGAGCGGTACCTATACATTGCGAGTGGCTCTCGCTACTGCCAATGTTTCCGAATTACAGATTCAGGTAAACAATCCAGAATCACAGCCAGTTCTATTTACAACAGGACAGATTGGGCACGACAATACAATAGCAAGGCATGGAATTCATGGACTCTATCGACTCTACAGTGTTGACATTGCAGCATCTCTATTGGTGGAAGGAGGAGAGAACAGCATCTTCCTTTCGCAAACTATAAGCAGTTCCGCTTTCGATGGCGTCATGTATGATTATATCCGCCTCGAAGGCCCTCCATCTGATACTGTTCATTGA 1752 42.18 MASEILQLDIQDHHVVMDNGILQVTLSKPDGNVTGIRYNNIDNILEVDDKETHRGYWDLVWNSGTSGTTGTFDEMRGEEFEVIIENEEQIELSFKRNYSLKDMEVPLNIDKRFIMLRNSSGIYSYSIFEHLKEWPPFNLPQTRIVFKLRKDKFHYMAIADNRKRLMPLPEDRLRPRGKPLDFPEAVLLVNPKERPLFKGEMFLSAHYAGEDLVLKLNPDEPWKKVFGPVFFYLNSASDGADPLSLWEDAKTQMRKEVESWPYSFPASEDFPPPNQRGRLAGKLFVLDRYVNQEQIPATDAYVGVAAPGDAGSWQTENKGYQFWTKTAADGSFSIENVRIGDYNLYAWVSGFIGDYRYDVVVSISAGSDMDVGDLVYEPPRSGPTLWEIGIPDRSAAEFYIPDPDPKYINNLYVDHPDRFRQYGLWERYGELYPDADLIYTVGVSDYTKDWFFAHVTRTRNDGSHEATTWEIKFRVDNNIDKSGTYTLRVALATANVSELQIQVNNPESQPVLFTTGQIGHDNTIARHGIHGLYRLYSVDIAASLLVEGGENSIFLSQTISSSAFDGVMYDYIRLEGPPSDTVH 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29220105 29230077 + Sed0004180.2 Sed05g1551 714177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1551 583 Pfam Polysaccharide lyase family 4, domain III 384 574 IPR029411 -
Sed05g1551 583 CDD RGL4_C 386 575 - -
Sed05g1551 583 Gene3D - 274 371 - -
Sed05g1551 583 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 200 578 IPR051850 -
Sed05g1551 583 FunFam Rhamnogalacturonate lyase B 272 371 - -
Sed05g1551 583 SUPERFAMILY Galactose-binding domain-like 381 575 IPR008979 -
Sed05g1551 583 CDD RGL4_M 275 374 IPR029413 -
Sed05g1551 583 Pfam Polysaccharide lyase family 4, domain II 299 369 IPR029413 -
Sed05g1551 583 SUPERFAMILY Starch-binding domain-like 275 369 IPR013784 GO:0030246(InterPro)
Sed05g1551 583 Gene3D - 381 575 - -
Sed05g1551 583 Pfam Rhamnogalacturonate lyase family 3 200 IPR010325 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1551 Sed-Chr5:29220105 Sed13g1527 Sed-Chr13:20423355 1.00E-298 dispersed
Sed05g1550 Sed-Chr5:29220105 Sed05g1551 Sed-Chr5:29220105 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1551 K18195 - csv:101204193 967.992