Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1558 ATGCACGGACAGCCGCGCAAGCCTCAGAAACCGGAGGAAGAAGAAGCTTCGGCGGCGAAAGCCGCCAAGCTTCGTTCCCTGCAATTTCAATTGCTCCAATATCACCATCACAAGAACTATGATAAGGAGGCTCTAGATGTCAGTGCTAAGGTGCTGGAAATGAGTCCGGATCTGTATACGGCTTGGAACTATAGGAAACTTGCTGTAGAACACTCTATGAAGGAACCGCCATCAGATTCTGTGTCGATCCAAGCGATTTTCGTCGAGGAACTCAGAGTTGCTGAAAGTGCCCTGCGTCAGAATGTCAAGTCGTACAGCGCGTGGTATCATCGAAAATGGATTTTGAGCAAGGGACATTCTTCCACCGATCATGAATTGCGTCTTCTCGGAAAATTTCAGAAACTTGACGCTAGGAATTTTCATGCATGGAATTACAGAAGATTTGTGGCAGCGTTAATGAACATACCGGAGGAGAAAGAATTGATGCACACAACAGAAATGATTGACACTAATTTCAGCAATTATTCAGCGTGGCATAATCGTAGTGCGCTTCTTGCTAAATTGCTGAACAAAAAGGCTGAAGGTTATTTCCCAGTGGAAAAGGTGATAAACGAGGAGTACGAGCTCGTGCACCAAGCTATTTTCACTGATCCAGACGACCAAAGTGGTTGGTTTTATCATCATTGGCTTCTGGACCAAACATTGAAAGCAAATGCTCCGAGTCTTGTTTCTTCTTGGCCAACTCACAGTTATAATGTCGCATTGTCGAGAACTGGATGTTGGAACGATCACACTCTCTCTCCATTTAATCGTTTCCATTCTGATTCAGGAACAATACCCCTCATTCTTTACTTCGATCAACCAGTTCAGGGTGTCGACTCATCTTCAGTGAGTGTTAAATCTACAGCTAATTTAAGAAATCTTATTTGGAAACCACTCTCTAAATGTAACCGTGATGCTGCCAAAGCTTGGGTTAGTCATCTGATTTTTCCTCAAGAACAGCTCAATTCTTCTGGATTTTATTCAGTAGAAGTCACTATTGGTCATTCTCAGAAAATAACATCTACAAGCGGTTTTCATTATGTAAAACCCACTTGTTTTTCTTTTAAAGTGGCTGTGCATATAGAAGAAACTCCTATTGAAGATTGTGGTAATGAAGGGATCTGGTGGAAGGATGAAAACTTTACTAGTTGCAGAATTAGTCCTCACGATTTTCCATCCGTTTCGTTCAATAATCTAACCATTGAGGATGATTTTGCGCCTTCTAGTTCTGAATGGTGTGCCGAGATGATAAATAATGAAATAGCTCTTTTCCGAGAATTGTTATCAGACACTGACTGTAAAATTGGAAAGCTCACTCTTGCAAGATTGCTGATGGCTCATGCTGCAGTATCATCTTCACATGCCAATAAAATTGTCCAATTTGAAGAAGTCCTTGAGCTTTACCAGGACCTGATGAAGTTGGACCCATCACATTTTCATTACTACAAGGATGAACACAGCTTAGTTTTATTGCAGAAGGTGGCATCTACTACAGAGTCTTTATTAAGACACTGCTATTGCTACAAAGACCGGACATCGCCGTACATTGGTAGTACTACCTGTCTACGGCTCAATAATTTATCAATTTCACTGATTGGATCTGTTGAAAAACTACTTTGGGTTCGAGTGCTGGACCTCAGCCACAATGAACTTCGATCAATTGAAGGATTGGAGGCCTTGCAGCTTCTCTCTTGCTTGAATTTGAGCAACAATAAGATTGGAAGTTTTACAGCGTTGGAGTCTCTGAGACTTTTGAAGTCTTTAAAAGTTTTGGATATCTCATATAACGAGATAGGTTCGCATTCTATCGACGCAACCAGATATCTCTTCTTGTCTCCCCTGTCTCATTCTGAACAAAACTATTCGAGCAGTGATACGACGACGGTAACGGATTGCCCTGATCTGGCACGTTACTGGGAAGCTTATTTTTTATTCAAGGATCTGAGGTTGACTCAATTAGACATTGAAGGAAACATGATATCTGGTGAAAGGTTTAAGGCATTTCTAGTCAAGGTTCTTCCCAAACTCCACTGGCTTGATGGCAAACAAGTGTACAGTAGATGA 2106 41.55 MHGQPRKPQKPEEEEASAAKAAKLRSLQFQLLQYHHHKNYDKEALDVSAKVLEMSPDLYTAWNYRKLAVEHSMKEPPSDSVSIQAIFVEELRVAESALRQNVKSYSAWYHRKWILSKGHSSTDHELRLLGKFQKLDARNFHAWNYRRFVAALMNIPEEKELMHTTEMIDTNFSNYSAWHNRSALLAKLLNKKAEGYFPVEKVINEEYELVHQAIFTDPDDQSGWFYHHWLLDQTLKANAPSLVSSWPTHSYNVALSRTGCWNDHTLSPFNRFHSDSGTIPLILYFDQPVQGVDSSSVSVKSTANLRNLIWKPLSKCNRDAAKAWVSHLIFPQEQLNSSGFYSVEVTIGHSQKITSTSGFHYVKPTCFSFKVAVHIEETPIEDCGNEGIWWKDENFTSCRISPHDFPSVSFNNLTIEDDFAPSSSEWCAEMINNEIALFRELLSDTDCKIGKLTLARLLMAHAAVSSSHANKIVQFEEVLELYQDLMKLDPSHFHYYKDEHSLVLLQKVASTTESLLRHCYCYKDRTSPYIGSTTCLRLNNLSISLIGSVEKLLWVRVLDLSHNELRSIEGLEALQLLSCLNLSNNKIGSFTALESLRLLKSLKVLDISYNEIGSHSIDATRYLFLSPLSHSEQNYSSSDTTTVTDCPDLARYWEAYFLFKDLRLTQLDIEGNMISGERFKAFLVKVLPKLHWLDGKQVYSR 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29348100 29353630 - Sed0007462.1 Sed05g1558 714184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1558 701 Gene3D Ribonuclease Inhibitor 523 701 IPR032675 -
Sed05g1558 701 FunFam Rab geranylgeranyl transferase like protein 512 699 - -
Sed05g1558 701 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 86 120 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Sed05g1558 701 SUPERFAMILY L domain-like 531 699 - -
Sed05g1558 701 Gene3D Protein prenylyltransferase 1 252 - -
Sed05g1558 701 Pfam Protein prenyltransferase alpha subunit repeat 204 233 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Sed05g1558 701 Pfam Protein prenyltransferase alpha subunit repeat 42 71 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Sed05g1558 701 Pfam Protein prenyltransferase alpha subunit repeat 89 117 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Sed05g1558 701 Pfam Protein prenyltransferase alpha subunit repeat 123 150 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Sed05g1558 701 Pfam Protein prenyltransferase alpha subunit repeat 158 187 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Sed05g1558 701 ProSiteProfiles Leucine-rich repeat profile. 576 597 IPR001611 GO:0005515(InterPro)
Sed05g1558 701 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 40 74 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Sed05g1558 701 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 156 190 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Sed05g1558 701 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 121 155 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Sed05g1558 701 SUPERFAMILY Protein prenylyltransferase 9 500 - -
Sed05g1558 701 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 1 507 - GO:0004663(PANTHER)|GO:0005737(PANTHER)|GO:0005968(PANTHER)|GO:0018344(PANTHER)
Sed05g1558 701 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 202 236 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Sed05g1558 701 Pfam Leucine Rich repeats (2 copies) 555 594 IPR025875 -
Sed05g1558 701 ProSiteProfiles Leucine-rich repeat profile. 554 575 IPR001611 GO:0005515(InterPro)
Sed05g1558 701 FunFam Geranylgeranyl transferase type-2 subunit alpha 4 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1558 K14050 - - csv:101216457 1098.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1532 Sed-Chr13:20477713 Sed05g1558 Sed-Chr5:29348100 2.40E-286 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1200 . . . . . . . . . . . Cma14g01470 . . Sed05g1558 . . Bhi01g02690 Tan10g1287 Cmetu04g0591 . Hepe05g1229 . Lcy11g1142 . . . . . . . . . . . . . . . . Blo07g00087 Bda11g00457 . . Bpe13g00739 . . . . Cmo14g01509 . . . . . . . . . . . . . Cla07g01486 Cam07g1582 Cec07g1682 Cco07g1643 Clacu07g1573 Cmu07g1541 Cre07g1918 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005438 1 5 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 2 37