Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1560 ATGGAGTGTTTGGCCTGCAATTCCTTACCCGCCGCATTCGCCTTCTCCTTCTCCTTCTCCTTCTCCAAGCTCTCCGTTTCAACCTCTCCGCCGCCGATTCTCGCCGTCGCTCGCGTAGGAGCCATGCCGGTGTTTGGGGCTCTCAAAGCATCTCGCACAACCGATGCGCCGCAGTCCGTCGCCGACTCGCCGGACAAGGAGGTCAAGCTTTGGGGCGGTCGTTTCGAGGAGAGCGTCACCGATGCGGTTGAGCGATTTACCGAATCCATCTCCTACGATAAGCAGCTTTACAAGCACGACATCAGAGGGAGTCGAGCTCATGCTTCTATGCTAGCCAAGCAGGGACTGATGAGTGTTGATGAAAGGGACAGTATTCTCAAAGGTTTGGATGAAATCGAAAGGCGCATTGAAAGTGGTGATTTTGTTTGGAGAACAGATAGGGAGGATGTTCATATGAACATTGAAGCTGCCTTGATTGATATGATTGGTGAACCTGCAAAGAAGCTACATACTGCTCGAAGCCGTAACGACCAAGTTTTGACTGATTTTCGATTGTGGTGCCGAGATGCAATTGATGCTATTTTAGATGCTATTAAGTATCTTCAGGTTTCCATGGTCACTCTGGCATTGAAGAACGAAGGAATAATCGTTCCGGGTTATACACATTTACAAAGAGCACAACCCGTTCTACTCCAACATCTACTCTTAGCATTTGTTGAGCAGCTTGAAAGAGATGCTAGCCGTTTGTCGGATTGCAGAGTTAGGCTAAATCTATGCCCGCTAGGTGCCTGTGCTCTAGCCGGCACAGGCCTTCCAATTGATCGTTTTATGACTGCTGAGGCTTTAGGGTTCTCTGCTCCCTTGAGAAACAGCATTGATGCAGTTTCAGATCGAGATTTTGCCTTAGAGTTTCTTTCTGCCAATGCCATTACGGCCATTCATCTCTCAAGGCTTGGAGAAGAATGGGTGCTGTGGGCTTCTGAAGAGTTTGGATTTTTAACGCCAAACGATTCCGTTTCAACTGGAAGTAGCATAATGCCTCAAAAGAAAAATCCAGACCCAATGGAACTGGTTCGTGGAAAATCTGCTAGAGTGATAGGAGACTTGGTCACCACTCTCACTTTGTGCAAAGGTCTGCCTCTGGCCTACAATCGTGATTTGCAGGAGGACAAAGAACCTGTATTTGACAGTGTAAAAACAATACTGGGGATGCTTGAAGTGTCAGCTGAGTTTGCTCAGAATATTTCTTTCAATCAGGAGAGAATACAGAAGGCGTTACCTGCTGGTTATCTTGATGCCACAACGCTGGCTGATTACCTTGTGAAGAAGGGAATACCTTTTAGAACAGGTCATGATTTAGTTGGGAAGTCAGTTGCCTTGTGTGTCACAAAGAATTGCTGCCTCCAAGACTTGAGTTTGGACGACCTAAGAAGCATAAGTCCAGTATTTGAAGCGGACGTTTACGAGTTTCTCGGGGCCGAGAATGCAATTAATAAATTTTGTTCATATGGTTCGACAGGAGCAGCCTGTGTCGCTACTCAAATCGAATATTGGGTTAATAAACTCCAAATCAATCCGTAG 1581 46.62 MECLACNSLPAAFAFSFSFSFSKLSVSTSPPPILAVARVGAMPVFGALKASRTTDAPQSVADSPDKEVKLWGGRFEESVTDAVERFTESISYDKQLYKHDIRGSRAHASMLAKQGLMSVDERDSILKGLDEIERRIESGDFVWRTDREDVHMNIEAALIDMIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDAILDAIKYLQVSMVTLALKNEGIIVPGYTHLQRAQPVLLQHLLLAFVEQLERDASRLSDCRVRLNLCPLGACALAGTGLPIDRFMTAEALGFSAPLRNSIDAVSDRDFALEFLSANAITAIHLSRLGEEWVLWASEEFGFLTPNDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTTLTLCKGLPLAYNRDLQEDKEPVFDSVKTILGMLEVSAEFAQNISFNQERIQKALPAGYLDATTLADYLVKKGIPFRTGHDLVGKSVALCVTKNCCLQDLSLDDLRSISPVFEADVYEFLGAENAINKFCSYGSTGAACVATQIEYWVNKLQINP 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29368646 29374123 + Sed0019515.1 Sed05g1560 714186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1560 526 Gene3D Fumarase/aspartase (Central domain) 186 515 - -
Sed05g1560 526 Pfam Lyase 73 367 IPR022761 -
Sed05g1560 526 NCBIfam argininosuccinate lyase 70 518 IPR009049 GO:0004056(InterPro)|GO:0042450(InterPro)
Sed05g1560 526 Gene3D - 89 296 IPR024083 -
Sed05g1560 526 PRINTS Argininosuccinate lyase family signature 168 190 - -
Sed05g1560 526 PRINTS Argininosuccinate lyase family signature 209 229 - -
Sed05g1560 526 PRINTS Argininosuccinate lyase family signature 298 322 - -
Sed05g1560 526 PRINTS Argininosuccinate lyase family signature 260 276 - -
Sed05g1560 526 PRINTS Argininosuccinate lyase family signature 342 358 - -
Sed05g1560 526 PRINTS Argininosuccinate lyase family signature 377 396 - -
Sed05g1560 526 FunFam Argininosuccinate lyase 428 499 - -
Sed05g1560 526 PRINTS Fumarate lyase superfamily signature 342 358 IPR000362 -
Sed05g1560 526 PRINTS Fumarate lyase superfamily signature 298 325 IPR000362 -
Sed05g1560 526 PRINTS Fumarate lyase superfamily signature 214 232 IPR000362 -
Sed05g1560 526 PRINTS Fumarate lyase superfamily signature 169 187 IPR000362 -
Sed05g1560 526 Hamap Argininosuccinate lyase [argH]. 69 520 IPR009049 GO:0004056(InterPro)|GO:0042450(InterPro)
Sed05g1560 526 SUPERFAMILY L-aspartase-like 70 522 IPR008948 GO:0003824(InterPro)
Sed05g1560 526 FunFam Argininosuccinate lyase 69 173 - -
Sed05g1560 526 PANTHER ARGININOSUCCINATE LYASE 65 525 IPR009049 GO:0004056(PANTHER)|GO:0004056(InterPro)|GO:0005829(PANTHER)|GO:0042450(InterPro)|GO:0042450(PANTHER)
Sed05g1560 526 Pfam Argininosuccinate lyase C-terminal 430 498 IPR029419 -
Sed05g1560 526 CDD Argininosuccinate_lyase 89 522 IPR009049 GO:0004056(InterPro)|GO:0042450(InterPro)
Sed05g1560 526 Gene3D - 427 499 - -
Sed05g1560 526 ProSitePatterns Fumarate lyases signature. 342 351 IPR020557 GO:0003824(InterPro)
Sed05g1560 526 FunFam Argininosuccinate lyase chloroplastic 296 454 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1560 K01755 - - csv:101205167 926.776
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4279 Sed-Chr1:71028531 Sed05g1560 Sed-Chr5:29368646 9.50E-15 dispersed
Sed04g0203 Sed-Chr4:1496696 Sed05g1560 Sed-Chr5:29368646 1.80E-102 dispersed
Sed05g1560 Sed-Chr5:29368646 Sed03g1406 Sed-Chr3:8943719 9.70E-232 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g518 . Blo12g00732 . Bda03g00456 . . Bma04g00431 Bma01g02585 . Cmo12g00155 . . . Car12g00183 Sed01g4279 . Cpe07g00171 Bhi04g01383 Tan02g2479 Cmetu03g0752 . Hepe10g0432 . Lcy13g1481 . . . . . . . . . . . Lsi04g02280 Csa03g04493 Chy04g00207 . . . Bda11g00800 . . . . . Sed05g1560 . . Cma12g00201 . . . . . Bhi09g02498 Tan01g3852 Cmetu04g3041 . Hepe01g2170 Mch11g0709 . Cla11g01425 Cam11g1480 Cec11g1510 Cco11g1506 Clacu11g1641 Cmu11g1459 Cre11g1877 . . . Cme04g00237
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002720 2 2 1 3 1 1 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 1 54