Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1562 ATGGAGAATTTAGATGGAAAATTAGCAGATTCTTCGCAATGCGTTCGTGTTGCTGTTAATATTAGACCTTTGATTACGTCCGAGCTTATGGTTGGTTGTACGGATTGTATTACTATCGTGCCCGAAGAACCTCAGGTTCAAATTGGCTCTCATGTTTTCACATATGACAACGTGTACGGTAGTTCTGGATTGCCATCTTACACATTGTACGACGACTGTGTTGCTCCATTAGTCGATGCATTATTTCAGGGCTATAATGCCACTGTTCTTGCTTATGGACAGACCGGGTCTGGAAAGACTTACACAATGGGGACAAATTATTGTGGTGAAGGAAGTAAAGATGGAGTAATACCTAAAGTAATGGAAAAAATATTTAAAAAGGTGGAGACAATGGAAGATTCTACAGAATTCTTGATTAGAGTTTCGTTTATTGAGATATTTAAGGAAGAAGTGTTTGATTTGCTCGACACAAATACTTGCCTTAACACAAAGGGTGAAGGGACAAAGCCTTTTGCCCCTCCTCGAGTTCCAATACAAATACGAGAAACTGTGAATGGTGGGATTACACTTGTTGGTGTCACCGAGGCAGAGGTTCGAACCACGGAAGAAATGACATCTAACTTGTCTCGTGGTTCGTTAGCACGTGCAACTGGAAGTACCAACATGAATAGCCAGTCAAGTCGATCACATGCCATCTTTACGATTACCATGGAGCAGAAGAAAAAGCCTGGACAAGGCATGACTCACGACGATATATGCGACGACATTCTATGTGCAAAGCTCCATTTGGTGGATCTTGCAGGCTCTGAAAGAGCAAAACGAACAGGAGCAGATGGCATGCGCTTTAAAGAAGGTGTTCATATCAACAAGGGTCTTTTGGCTCTCGGCAACGTCATAAGTGCATTGGGAGATGAGAAGAAACGAAGAGAAGGGTGTCATGTTCCCTACCGTGATAGCAAGTTAACACGTTTGCTGCAGGATTCTCTTGGAGGCAACACCAGAACGGTGATGATTGCTTGTGTTAGTCCTGCCGACTCAAATGCTGAAGAGACCCTAAACACCTTAAAATATGCTAATCGTGCTCGCAATATTCAAAACAAAGCAGTTATCAACCGGGATCCTGTAGGAGCTCAGATACAGAAAATGCGAAGCCAAATTGAGCAGTTGCAAGCTGAGCTTTTATTCTACCGCGGTGATGCAGGTTTACCATATGAGGAGCTTCAGATTCTAAAACACAAAATATCGTTACTCGAAGCAAGTAATGGAGAGTTGTTGCGGGAACTTCAAGATCGCCGAGTCACTTGCAATCATTTGTCTCAACGTGCTATTGATGCTCAGGTTGAAAAAGACAAACTGGCCATGATAATTGAATCAGTGCGGAATGGGAAATCTTTAGATGAGATAGAATCCAACAGCGATAAGGATTGTGAAGTGGTCAAGAGTTATGTTTCCAAAATTCAAGAGCTAGAAGGGGAGGTGTTGCGTTTGCAAAGCTGTAACAACTCGAAACATAGCCGATATGCTGATCTTGTGGAGTCTGATGATGATAGGCCCGACTCTTGTAATATCTTATTTCCATGTCCAAATGATTATTCGTCGGACTATGATCCCAAAGCTGTCGAAGATGGAATCGAAGATCATGAAAAGGAGCTTGAACATTCAACAGCCCAAGAAAGGTTGGATAAGGAGCTAAAAGAATTGGATAAGAAACTTGAGCAGAAGGAGGCTGAAATGAAGCGGTTTGCGAGTTCGGATACCTCTATTCTTAAACAACATTATGAAAAGAAGGTCCATGAACTGGAACGAGAAAAGAGAGCCTTACAGAAAGAGATCGAGGAACTTAAATGTAATCTTTCGAACATGCCTTCTACATCCGGTGACGGTGCACAAAAGTTGAAGCAAGAATATCTTCAGAAATTGAATTTCTTGGAGACCCAGGTCTCAGAGTTGAAGAAAAAACAAGATGCTCAGGCTCAAATATTGAGACAAAAGCAAAAGAGTGATGAGGCAGCAAAAAGATTACAGGATGAGATCCATAGAATCAAAACCCATAAGGTTCAACTTCAACACAAGATTAAACAGGAATCTGAGCAATTTAGATTATGGAAGGCTTCCAGAGAGAAGGAAGTTCTCCAGCTGAAGAAGGCAGGTAGGAGAAATGAATATGAGATGCATAAGCTCTTAGCTTTGAATCAAAGGCAGAAAATGGTCTTGCAACGAAAGACAGAAGAAGCTACTCAGGCAACAAAAAGACTTAAAGAGCTTTTAGAATCTCGAAAGGCAGCACGAGAAACTTCCAGCAGTGGAGCAACTGGTCCTGGAATTCAGGCTTTAATGCAGAACATTGAGCATGAACTTGAAGTTACAGTAAGGGTGCATGAAGTTCGGTCTGAATATGAACGGCAAATGGAAGAGAGGTCGAAGATGGCCAAGGAATTGGCGAAGCTTAAGGAGGAAGAAGAGTTGCATAGGGGAGTTAGTTTGAGTAATTGTACTGAAACAATGTCACCTGGTGCAAGAAATTCAAGAATTTTCGCTCTTGAAAGCATGCTCGCTACATCATCCAGCTCTCTGGTTTCTATGGCCTCTCATTTGTCTGAGGCAGAAGAACGTGAGCGCGTTCTCGGAGGTAGGGGTCGTTGGCATCAAGTTCGCTCTCTTGCAGATGCAAAGAATATTATGAATTTTTTGATGAATTTAGCATCCTCTTCAAGGTGTTTGTTATGGGACAAAGAGTTTGCTTCTAGGGAAAAACATTCAGAAGTTAGAGAATTGAAACAAAAAATAGTGAATCTTAGCGGCATGCTCAAAAAATCAGAAGCCCAAAAGGCCGAATTAATTCATCAGAACTCAGCTTTGAAAAAGTATTCCATGAGAAGCTCTTCAGATCAGGTTAACAGTGGTGGACATAACTATGATTTACGCAAGCAGGAGCTTCGGAATTCTATCGTTTTACTGGCAGACATGGATACCTCAGACTCAGATAACCCGGATCACTATTCAGATGGCGATGATGCGAATTATGATTGGGAGAAATCTTTGAAACGACGACAAACAAGAAAACGAGTCTCTAAAGCTAAGAGTCGTTCGATTATTGCCGTCTCAGATGGCACAAACAACGTAAACTCTAACTTGGATAGTTCAGGTGGTGGGGTACTTCATGCAAATGAGGTCACTGCTGCTACCAATGTTTGCTGCACTTGCAGCAAATCTTCTTCTTGCAAGACGACAAAGTGCCAATGTAGAGCCAACGGTGGTGCGTGCGGCTTGTCATGTGGTTGCATACCATCAAAGTGTTCGAATCGAGGTAGTAAAAGTGAGCGAGATGAGTCGATGCAACCAGATTTAGTCAGGGATGTTCGAAATACCACGGAAAATGATGAGACTGACGAAGAAGGTCATGGTCTTGTTTCTCATGGTGCAAGGTTGCTTCAAAATGCATTGGCAGAGAGGCCAAGTGTGGCTCCTTTGGAGGATGGTGGCACAAAAAGAAAGCCTTTATCAGACATAGGAAATACATTGGTGAAATCAAAGGCAAACAAGCCAAACCAGAGAAAGAAATGGCGAAAATCCACAATTCAACTCATTCCTACACCACAAGCACCTTCCCAACCAGAAAACCCTGAAGCCATCCAGAAGACAGAGAACAACCCAAGCGAGATGGTCAGCATCCCGTTGAAACTTCCCCGAGCCATGCGATCCGCCGCTACGAACGGAAGCAACCTACTGAGGGATAGAAACTCCGATCAACCGGAAGATTCGGTTGGCGGGAACAAAGAACATGAAGTTATTGTTCCAAAAAGAGTGAACGAGAAAGAAAACTGCAACAGGTAA 3834 42.67 MENLDGKLADSSQCVRVAVNIRPLITSELMVGCTDCITIVPEEPQVQIGSHVFTYDNVYGSSGLPSYTLYDDCVAPLVDALFQGYNATVLAYGQTGSGKTYTMGTNYCGEGSKDGVIPKVMEKIFKKVETMEDSTEFLIRVSFIEIFKEEVFDLLDTNTCLNTKGEGTKPFAPPRVPIQIRETVNGGITLVGVTEAEVRTTEEMTSNLSRGSLARATGSTNMNSQSSRSHAIFTITMEQKKKPGQGMTHDDICDDILCAKLHLVDLAGSERAKRTGADGMRFKEGVHINKGLLALGNVISALGDEKKRREGCHVPYRDSKLTRLLQDSLGGNTRTVMIACVSPADSNAEETLNTLKYANRARNIQNKAVINRDPVGAQIQKMRSQIEQLQAELLFYRGDAGLPYEELQILKHKISLLEASNGELLRELQDRRVTCNHLSQRAIDAQVEKDKLAMIIESVRNGKSLDEIESNSDKDCEVVKSYVSKIQELEGEVLRLQSCNNSKHSRYADLVESDDDRPDSCNILFPCPNDYSSDYDPKAVEDGIEDHEKELEHSTAQERLDKELKELDKKLEQKEAEMKRFASSDTSILKQHYEKKVHELEREKRALQKEIEELKCNLSNMPSTSGDGAQKLKQEYLQKLNFLETQVSELKKKQDAQAQILRQKQKSDEAAKRLQDEIHRIKTHKVQLQHKIKQESEQFRLWKASREKEVLQLKKAGRRNEYEMHKLLALNQRQKMVLQRKTEEATQATKRLKELLESRKAARETSSSGATGPGIQALMQNIEHELEVTVRVHEVRSEYERQMEERSKMAKELAKLKEEEELHRGVSLSNCTETMSPGARNSRIFALESMLATSSSSLVSMASHLSEAEERERVLGGRGRWHQVRSLADAKNIMNFLMNLASSSRCLLWDKEFASREKHSEVRELKQKIVNLSGMLKKSEAQKAELIHQNSALKKYSMRSSSDQVNSGGHNYDLRKQELRNSIVLLADMDTSDSDNPDHYSDGDDANYDWEKSLKRRQTRKRVSKAKSRSIIAVSDGTNNVNSNLDSSGGGVLHANEVTAATNVCCTCSKSSSCKTTKCQCRANGGACGLSCGCIPSKCSNRGSKSERDESMQPDLVRDVRNTTENDETDEEGHGLVSHGARLLQNALAERPSVAPLEDGGTKRKPLSDIGNTLVKSKANKPNQRKKWRKSTIQLIPTPQAPSQPENPEAIQKTENNPSEMVSIPLKLPRAMRSAATNGSNLLRDRNSDQPEDSVGGNKEHEVIVPKRVNEKENCNR 1277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29375330 29386311 - Sed0004579.1 Sed05g1562 714188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1562 1277 MobiDBLite consensus disorder prediction 1246 1277 - -
Sed05g1562 1277 Coils Coil 738 765 - -
Sed05g1562 1277 MobiDBLite consensus disorder prediction 1189 1218 - -
Sed05g1562 1277 Gene3D Kinesin motor domain 9 397 IPR036961 -
Sed05g1562 1277 SMART kinesin_4 12 372 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed05g1562 1277 SMART CXC_2 1061 1105 IPR033467 -
Sed05g1562 1277 Coils Coil 922 942 - -
Sed05g1562 1277 ProSitePatterns Kinesin motor domain signature. 259 270 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Sed05g1562 1277 Coils Coil 633 691 - -
Sed05g1562 1277 ProSiteProfiles Kinesin motor domain profile. 14 364 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed05g1562 1277 MobiDBLite consensus disorder prediction 1152 1218 - -
Sed05g1562 1277 FunFam kinesin-like protein KIN-4A isoform X1 8 392 - -
Sed05g1562 1277 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 398 IPR027417 -
Sed05g1562 1277 Coils Coil 553 584 - -
Sed05g1562 1277 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 10 1252 IPR027640 GO:0003777(InterPro)|GO:0003777(PANTHER)|GO:0005875(PANTHER)|GO:0007018(InterPro)|GO:0007052(PANTHER)|GO:0051231(PANTHER)
Sed05g1562 1277 Coils Coil 590 617 - -
Sed05g1562 1277 CDD KISc_KIF4 14 365 - -
Sed05g1562 1277 PRINTS Kinesin heavy chain signature 220 237 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed05g1562 1277 PRINTS Kinesin heavy chain signature 314 335 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed05g1562 1277 PRINTS Kinesin heavy chain signature 260 278 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed05g1562 1277 PRINTS Kinesin heavy chain signature 84 105 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed05g1562 1277 Pfam Kinesin motor domain 45 364 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed05g1562 1277 Coils Coil 379 399 - -
Sed05g1562 1277 Coils Coil 792 819 - -
Sed05g1562 1277 MobiDBLite consensus disorder prediction 1232 1277 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1562 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1562 Sed-Chr5:29375330 Sed13g1538 Sed-Chr13:20539865 0.00E+00 dispersed
Sed05g1561 Sed-Chr5:29375122 Sed05g1562 Sed-Chr5:29375330 0.00E+00 tandem
Sed10g0820 Sed-Chr10:5971701 Sed05g1562 Sed-Chr5:29375330 2.80E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g515 . . . . Bpe02g00139 . . . . . Cma01g01646 . . . Sed05g1562 . Cpe07g00170 Bhi04g01382 Tan02g2480 Cmetu04g1739 . Hepe10g0431 . Lcy13g1480 . . . . . . . Cone4ag1297 Cone7ag0858 . . Lsi04g02279 Csa03g04492 . . . . Bda11g00799 . . . . . . Cmo01g01696 . . . . . . . . . . . . . . Cla11g01423 Cam11g1479 Cec11g1509 Cco11g1505 Clacu11g1640 Cmu11g1458 Cre11g1876 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009556 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32