Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1564 ATGTTCCCAAAGCCCCACCACCAACCACCGCCTCTTTCTCAGCCTTTTCCCCGCTCCTTTCCCGTCGCCGCCGCCCCTCCGCCGCCCGATTTTTCCGCCACCGCCGATGACGATTCCGCCGCCCCCAAGGAACCGACCTCCGGCGGCGACGGAGCTTCCGTCGAAGTCGTCCGCCGCCCCCGCGGCCGACCTCCGGGATCCAAAAACAAGCCGAAGCCGACGTCCGCCGCCGTCGCCGCCGCACGCGACGGCGAAACGGCGATGAGTCCTTATGTGCTGGAGGTTTCTGGCGGTAGCGATATCGTCGAGGCGATTTCCAGATTCTGCCGCCGCAGAAACACAGGGCTCTGTATCATCAACGCTCATGGAACCGTCGCCGATGTGACTCTCCGGCAGCCGTCGTCGTCTCCGCCGGCCACCGTCACTTTCCATGGCCGATTTGATATCCTCTCCGTCTCCGCTACTTTCGTTCCTTACACGGCGTCGTTTCCGGTTCCTAACGGATTCACCATCAAATTAGCAGGGCCGCAGGGCCAGATCTTCGGCGGCGTTGTCGCCGGAGAGCTAATCGGCGCCGGAACCGTCTATGTAATCGCCGCCTCGTTCAATAATCCATCCTATCAGCGGTTACCGGCCGAGGACGAAATCAGAAAAATCTCCTTCAGCGATGTCGAAGAAGACCAATCGCCGCCGATCTCCGGCGGAAAAGATAGCGAAAACGCCGCCACCGCCGATTCTTGCGGCCTCCTGCCGATGTACGGCAGCCAGTCGTCGTCGGACGTAATATGGACTCCGGCCGCCAGACAACCGCCGCCGCAGCCGCCGCCGCACCACCGCCAGTACTAA 846 62.41 MFPKPHHQPPPLSQPFPRSFPVAAAPPPPDFSATADDDSAAPKEPTSGGDGASVEVVRRPRGRPPGSKNKPKPTSAAVAAARDGETAMSPYVLEVSGGSDIVEAISRFCRRRNTGLCIINAHGTVADVTLRQPSSSPPATVTFHGRFDILSVSATFVPYTASFPVPNGFTIKLAGPQGQIFGGVVAGELIGAGTVYVIAASFNNPSYQRLPAEDEIRKISFSDVEEDQSPPISGGKDSENAATADSCGLLPMYGSQSSSDVIWTPAARQPPPQPPPHHRQY 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29402132 29403248 + Sed0023627.1 Sed05g1564 714190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1564 281 SUPERFAMILY AF0104/ALDC/Ptd012-like 87 214 - -
Sed05g1564 281 ProSiteProfiles PPC domain profile profile. 85 225 IPR005175 -
Sed05g1564 281 Pfam Plants and Prokaryotes Conserved (PCC) domain 90 203 IPR005175 -
Sed05g1564 281 Gene3D - 89 225 - -
Sed05g1564 281 MobiDBLite consensus disorder prediction 221 281 - -
Sed05g1564 281 MobiDBLite consensus disorder prediction 250 264 - -
Sed05g1564 281 MobiDBLite consensus disorder prediction 1 80 - -
Sed05g1564 281 CDD DUF296 90 202 IPR005175 -
Sed05g1564 281 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 241 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed05g1564 281 FunFam AT-hook motif nuclear-localized protein 89 220 - -
Sed05g1564 281 MobiDBLite consensus disorder prediction 1 28 - -
Sed05g1564 281 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0209 Sed-Chr4:1561219 Sed05g1564 Sed-Chr5:29402132 5.30E-67 dispersed
Sed05g1564 Sed-Chr5:29402132 Sed08g1584 Sed-Chr8:30942651 1.10E-40 dispersed
Sed13g1540 Sed-Chr13:20571011 Sed05g1564 Sed-Chr5:29402132 3.60E-23 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1564 - - - 0.0