Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1594 ATGGCGGCCGCCTCTACGCAACGTGAGGAGTTCGTTTACCTCGCCAAGCTCGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCGAGTTTATGGAGAAGGTCTCCGCCGCCATCGACGACGACGAGCTCACCGTCGAGGAGAGGAACCTCCTCTCCGTCGCCTACAAGAACGTCATCGGAGCTCGTAGAGCTTCGTGGAGGATTATCTCCTCCATCGAGCAGAAGGAGGAGAGCCGAGGGAACGATGATCATGTCTCGATCATCCGCGAGTACAGATCTAAGATTGAGAACGAGCTCTCCAACATCTGCGGTGGGATCCTTAAGCTTCTCGACTCGCGTCTTATTTCCTCTGCTGCTACTGGAGATTCCAAGGTGTTTTATCTGAAAATGAAGGGCGATTATCATAGATATCTGGCGGAGTTTAAGACCGGCGGTGAACGGAAGGAAGCTGCTGAAAGTACTCTAACTGCTTATAAATCTGCTCAGGATATTGCAAATGCTGAACTTGCACCTACTCACCCGATACGTCTTGGGCTGGCCTTGAACTTCTCGGTGTTCTATTATGAGATTCTGAACTCCCCTGATCGTGCTTGTACCCTTGCCAAACAGGCTTTTGATGAAGCAATTGCTGAGTTGGATACACTGGGCGAGGAGTCATACAAGGACAGCACTTTGATCATGCAACTTCTTCGTGACAACCTTACTCTATGGACTTCAGACATGCAGGATGATGGAGATGATATCAAAGAAACAGCTCCCAAACGTGATGAAGAGTAG 777 50.45 MAAASTQREEFVYLAKLAEQAERYEEMVEFMEKVSAAIDDDELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVSIIREYRSKIENELSNICGGILKLLDSRLISSAATGDSKVFYLKMKGDYHRYLAEFKTGGERKEAAESTLTAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACTLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGDDIKETAPKRDEE 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29693563 29697118 - Sed0012216.1 Sed05g1594 714220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1594 258 PANTHER 14-3-3 PROTEIN 7 243 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Sed05g1594 258 Gene3D - 1 252 IPR036815 -
Sed05g1594 258 FunFam 14-3-3 protein epsilon 4 251 - -
Sed05g1594 258 Coils Coil 14 34 - -
Sed05g1594 258 Pfam 14-3-3 protein 14 238 IPR023410 -
Sed05g1594 258 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Sed05g1594 258 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Sed05g1594 258 SMART 1433_4 8 250 IPR023410 -
Sed05g1594 258 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Sed05g1594 258 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Sed05g1594 258 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Sed05g1594 258 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Sed05g1594 258 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Sed05g1594 258 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Sed05g1594 258 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
Sed05g1594 258 PIRSF 14-3-3 2 250 IPR000308 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1594 Sed-Chr5:29693563 Sed10g1197 Sed-Chr10:21811597 1.40E-119 dispersed
Sed13g2141 Sed-Chr13:26046387 Sed05g1594 Sed-Chr5:29693563 3.00E-133 wgd
Sed04g0158 Sed-Chr4:1074549 Sed05g1594 Sed-Chr5:29693563 3.50E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1594 K06630 - csv:101210822 471.855