Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1600 ATGGCGAAATTCAATTGCTTCTCTGTTCGGTCCGGCAAGAAGAAGAAAACCAAGGATGATTTAGAATCGCTAAGACTTGCTGAGTTGAATAGTTTAACGAAGACTTTGCAAGTCAGTATTCGTCGCCCGGAGGAGCATTTTCAAGATGGAGAAGTGAAGTCGTCGACTCTGGACGTTGCCATTCTCTACCCGTCCGAGACAAATTCTAAGCTGGATGTTAAGGTAACGAACAATGAGAATTCTGTAGCTGGAGGGGTGGTAGAAGCTGCATATGAAGGGGAAGATGAGCGTGATGACAACTCCATCAAGAGGAACCCTTCTGACTTTGATCTCTCTGCTCAAGATACCTGTGGAGAAGATCTCGAGTTTCGATTTTCTACTTCATTGGGAAAAGAAGTTGATAAGATCGTTATTGACGGCGGCGAAGGAGCGGGAGAAGGGTCTGATGCAATCCAAAGTGGACATGTTAGTGATCCAGGAATTCGTAAGGCAGTATCTTGGGCAACGCCTAAGCTTAAACGCTCCTGCTCTAATTTGGAAACTAGGGATGTGTATAGAAATTTATCTCATCAGTTGCCTCCACCGAAGTGTCAATCTTTCGAAAAACTGCAAGAATTGGCAGATGAAATCAGGAACTTTGTTGATCCAGGCAGTCCGAAGTCCGTTATGACCCATCGCAGTGCTGATAAAGTGATGTTGAAGAAGCGTTCTTCAAGCCAGATTCTTCCTTCCCGAAGTAGAAGATTGTGGTGGAAGTTGTTCCTGTGGAGCCATAGAAATCTTCAAAAGCCGTGTACTACCAGGGCCACGGCTCTCAACAGCTCCGCTTTCAACCAGCAAGGTGGGTATTGTTCGGATAGTCTTGAGCCAAACAGAACAGGGGGGAAAAGTATGATGGAATCACCTGGATCATTTACTGAGGAAACCTGGACTGATGGCCCAAATGACAGTAAAATTGAGGATCAGAATCAGGAGAGTTTGTGTAATGGTGTCTCTGGTTTGTGGCCACAAAACCAATGGGTTGCATTTTCAGCAGAGTCGTCTTCCCTAAGAAGAGTGGATGAGTGGGTGAAGGATCTTCAAATTGAGCCCCGTCTTTCGATCGACAGGGTTGAGGATGACAATGATCCAGATGCTTTTCTCCCGCCATCTCCTGAGAGAACTACAACTCACACAACACGACGCGGGGATGGAAATCTAACAGAAGAGATTTTGTATGCCAATAGCTTCATTCAGTCTCTGAATTCTTCTTCAACTGTGGCTCACATCTCTGGTATTGGCTTGAAAGCGATACCGACAATCTCACACCTATCGGGGCTTAGATCTGTCAATTTGTCTGGCAACCTCATCGTTCACATCAACCCTGGATCTCTGCCCAAGGGACTGCACACTCTTAACTTGTCCAGGAACAAGATTAGTGCCATTGAAGGACTCAAGGAATTAACTCGACTTCGGATACTTGATCTGAGCTACAATCGCATATCCCGCATAGGACACGGGTTGTCGAACTGTTCGATCATCAAGGAACTTCATCTTGCCGGCAACAAGATTAGTGATGTCGAGGGGCTGCATCGACTCTTAAAACTCACAGTTCTCGATCTCAGCTTCAACAAGATTTCAACCACCAAAGCTCTGGGCCAACTTGTTGCCAACTATAACTCGCTTCAAGCTCTTAATCTTTTGGGGAATCCAATTCAAACCAATGTGAGCGACGACCAACTACGCAAGGCAGTTATCGGCCTTCTTCCAAACCTTATTTATCTAAACAGGCAGGCCATTAAAGCACAGAGAGCTCGAGAAGTAGCGACAGATAGCATTGCCCGAGCTGCACTAGGGAACGGTGGTTGGAGTTCTCGTAGAAGAACGTCGAGGAAAACGAGCCATATTGCATCGTCTTCCTCTAGTGGGCACAGGAGCAGTGCAAGCGTTGCACACAAAGGCAGGCATAGATCAAAAGCGCCAACCTCGCGCTACTCGTCTCTGGGGATGGCTTCACCGGCTCTTCCTTCTTCAACACGTTAG 2022 46.64 MAKFNCFSVRSGKKKKTKDDLESLRLAELNSLTKTLQVSIRRPEEHFQDGEVKSSTLDVAILYPSETNSKLDVKVTNNENSVAGGVVEAAYEGEDERDDNSIKRNPSDFDLSAQDTCGEDLEFRFSTSLGKEVDKIVIDGGEGAGEGSDAIQSGHVSDPGIRKAVSWATPKLKRSCSNLETRDVYRNLSHQLPPPKCQSFEKLQELADEIRNFVDPGSPKSVMTHRSADKVMLKKRSSSQILPSRSRRLWWKLFLWSHRNLQKPCTTRATALNSSAFNQQGGYCSDSLEPNRTGGKSMMESPGSFTEETWTDGPNDSKIEDQNQESLCNGVSGLWPQNQWVAFSAESSSLRRVDEWVKDLQIEPRLSIDRVEDDNDPDAFLPPSPERTTTHTTRRGDGNLTEEILYANSFIQSLNSSSTVAHISGIGLKAIPTISHLSGLRSVNLSGNLIVHINPGSLPKGLHTLNLSRNKISAIEGLKELTRLRILDLSYNRISRIGHGLSNCSIIKELHLAGNKISDVEGLHRLLKLTVLDLSFNKISTTKALGQLVANYNSLQALNLLGNPIQTNVSDDQLRKAVIGLLPNLIYLNRQAIKAQRAREVATDSIARAALGNGGWSSRRRTSRKTSHIASSSSSGHRSSASVAHKGRHRSKAPTSRYSSLGMASPALPSSTR 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29792028 29795473 - Sed0026585.1 Sed05g1600 714226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1600 673 SMART LRR_sd22_2 481 503 - -
Sed05g1600 673 SMART LRR_sd22_2 526 547 - -
Sed05g1600 673 SMART LRR_sd22_2 459 480 - -
Sed05g1600 673 SMART LRR_sd22_2 504 525 - -
Sed05g1600 673 FunFam Outer arm dynein light chain 1 protein 500 598 - -
Sed05g1600 673 MobiDBLite consensus disorder prediction 613 673 - -
Sed05g1600 673 Gene3D Ribonuclease Inhibitor 503 599 IPR032675 -
Sed05g1600 673 MobiDBLite consensus disorder prediction 654 673 - -
Sed05g1600 673 ProSiteProfiles Leucine-rich repeat profile. 483 505 IPR001611 GO:0005515(InterPro)
Sed05g1600 673 Pfam Leucine rich repeat 439 494 IPR001611 GO:0005515(InterPro)
Sed05g1600 673 FunFam Outer arm dynein light chain 1 protein 386 499 - -
Sed05g1600 673 SUPERFAMILY Outer arm dynein light chain 1 428 594 - -
Sed05g1600 673 MobiDBLite consensus disorder prediction 627 641 - -
Sed05g1600 673 Gene3D Ribonuclease Inhibitor 399 502 IPR032675 -
Sed05g1600 673 PANTHER NISCHARIN RELATED 151 641 - GO:0005737(PANTHER)
Sed05g1600 673 SMART LRR_typ_2 526 548 IPR003591 -
Sed05g1600 673 SMART LRR_typ_2 437 460 IPR003591 -
Sed05g1600 673 SMART LRR_typ_2 481 504 IPR003591 -
Sed05g1600 673 Pfam Leucine Rich repeats (2 copies) 508 543 IPR025875 -
Sed05g1600 673 MobiDBLite consensus disorder prediction 368 397 - -
Sed05g1600 673 MobiDBLite consensus disorder prediction 291 312 - -
Sed05g1600 673 ProSiteProfiles Leucine-rich repeat profile. 528 549 IPR001611 GO:0005515(InterPro)
Sed05g1600 673 ProSiteProfiles Leucine-rich repeat profile. 506 527 IPR001611 GO:0005515(InterPro)
Sed05g1600 673 ProSiteProfiles Leucine-rich repeat profile. 461 482 IPR001611 GO:0005515(InterPro)
Sed05g1600 673 MobiDBLite consensus disorder prediction 291 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1600 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1986 Sed-Chr5:33191989 Sed05g1600 Sed-Chr5:29792028 8.10E-29 transposed
Sed13g2134 Sed-Chr13:25986315 Sed05g1600 Sed-Chr5:29792028 4.70E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g415 . . . Bda03g00490 Bpe02g00110 Bpe04g00445 . . . . Cma01g01609 Cma09g00558 Car01g01227 . . Cpe06g00424 . . . . . . . . . . . . . . . Cone4ag1333 Cone7ag1596 Cone17ag1215 Cone20ag0510 Lsi04g02236 Csa03g04447 Chy04g00253 . . . Bda11g00767 . . . . . Sed05g1600 Cmo01g01655 Cmo09g00548 . . . Car09g00489 . Cpe02g00371 Bhi09g02438 Tan01g3790 Cmetu12g0935 . Hepe01g2129 Mch11g0667 . Cla11g01383 Cam11g1441 Cec11g1467 Cco11g1463 Clacu11g1598 Cmu11g1417 Cre11g1837 . . . Cme04g00283
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008863 1 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34