Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1601 ATGGATAAGCTCTGCTGTTTTAATGCTTCATACTCTCAGAGTAGATCCGCGTTAGACTACGGTAAAGGAAGAAGCCATGAGGGGCTAATCAGGTATGGGTTCTGCCTGGTAAAAGGGAAAGCTAACCATCCCATGGAAGATTACCATGTTGCTAAGTTTGTTCAGATTCAACAACATGAGTTGGGGCTATTTGCTATTTATGATGGCCATTTAGGAGAAAATGTGCCTGCCTACTTACAAAAGCACTTGTTTTCTAATATTCTGAAAGAGGAAGAATTTTGGGTTGACCCGAACAGCTCCATCTTAAAAGCTTACGAAAAGACGGACCAGGCAATTCTTTCACATAGCTCTGACTTGGGTCGTGGCGGATCAACTGCTGTTACTGCTATTCTGGTTAATGGTCAACGGTTATTGCTGGCCAATGTTGGAGATTCACGCGCAGTTCTTTTGAGAGGGGGTGAAGCTGTACAGATGACGGTTGATCATGAGCCGAATACAGAACGCTGCATCATTGAGAATAAAGGTGGCTTTGTTTCGAATATGCCAGGAGATGTACCTCGAGTCAACGGCCAGCTTGCAGTTTCACGGGCATTCGGAGACAAGAGTCTGAAATCTCACCTGCGATCGGATCCTGACATACACGATATCATCATAGACCCCAACATCGATATATTAATTCTCGCCAGCGATGGTCTTTGGAAGGTAATGGCCAATCAAGAAGCTGTCGATATCGCTCGAAAAATTAAAGATCCTTTGAAGGCTGCTAAGCAGTTAATAACTGAGGCTTTGCAGAAAGAAAGTAAAGATGATATATCGTGCATTGTGGTTAGATTTAGGTGA 840 43.57 MDKLCCFNASYSQSRSALDYGKGRSHEGLIRYGFCLVKGKANHPMEDYHVAKFVQIQQHELGLFAIYDGHLGENVPAYLQKHLFSNILKEEEFWVDPNSSILKAYEKTDQAILSHSSDLGRGGSTAVTAILVNGQRLLLANVGDSRAVLLRGGEAVQMTVDHEPNTERCIIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIHDIIIDPNIDILILASDGLWKVMANQEAVDIARKIKDPLKAAKQLITEALQKESKDDISCIVVRFR 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29810283 29814106 - Sed0026805.1 Sed05g1601 714227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1601 279 SMART PP2C_SIG_2 42 278 IPR001932 -
Sed05g1601 279 FunFam Probable protein phosphatase 2C 39 22 279 - -
Sed05g1601 279 SUPERFAMILY PP2C-like 24 278 IPR036457 -
Sed05g1601 279 CDD PP2Cc 30 278 IPR001932 -
Sed05g1601 279 Gene3D - 27 279 IPR036457 -
Sed05g1601 279 Pfam Protein phosphatase 2C 40 271 IPR001932 -
Sed05g1601 279 SMART PP2C_4 23 276 IPR001932 -
Sed05g1601 279 ProSiteProfiles PPM-type phosphatase domain profile. 31 278 IPR001932 -
Sed05g1601 279 PANTHER PROTEIN PHOSPHATASE 26 276 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1601 Sed-Chr5:29810283 Sed05g1603 Sed-Chr5:29810283 1.30E-131 dispersed
Sed05g1601 Sed-Chr5:29810283 Sed05g1602 Sed-Chr5:29810283 5.80E-151 tandem
Sed13g2130 Sed-Chr13:25963283 Sed05g1601 Sed-Chr5:29810283 1.60E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1601 K17506 - csv:101213414 499.204