Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1602 ATGCTTCATACTCTCAGATCCGCGTTAGACTACGGTAAAGGAAGAAGCCATGAGGGGCTAATCAGGTATGGGTTCTGCCTGGTAAAAGGGAAAGCTAACCATCCCATGGAAGATTACCATGTTGCTAAGTTTGTTCAGATTCAACAACATGAGTTGGGGCTATTTGCTATTTATGATGGCCATTTAGGAGAAAATGTGCCTGCCTACTTACAAAAGCACTTGTTTTCTAATATTCTGAAAGAGGAAGAATTTTGGGTTGACCCGAACAGCTCCATCTTAAAAGCTTACGAAAAGACGGACCAGGCAATTCTTTCACATAGCTCTGACTTGGGTCGTGGCGGATCAACTGCTGTTACTGCTATTCTGGTTAATGGTCAACGGTTATTGCTGGCCAATGTTGGAGATTCACGCGCAGTTCTTTTGAGAGGGGGTGAAGCTGTACAGATGACGGTTGATCATGAGCCGAATACAGAACGCTGCATCATTGAGAATAAAGGTGGCTTTGTTTCGAATATGCCAGGAGATGTACCTCGAGTCAACGGCCAGCTTGCAGTTTCACGGGCATTCGGAGACAAGAGTCTGAAATCTCACCTGCGATCGGATCCTGACATACACGATATCATCATAGACCCCAACATCGATATATTAATTCTCGCCAGCGATGGTCTTTGGAAGGTAATGGCCAATCAAGAAGCTGTCGATATCGCTCGAAAAATTAAAGATCCTTTGAAGGCTGCTAAGCAGTTAATAACTGAGGCTTTGCAGAAAGAAAGTAAAGATGATATATCGTGCATTGTGGTTAGATTTAGGTGA 813 43.79 MLHTLRSALDYGKGRSHEGLIRYGFCLVKGKANHPMEDYHVAKFVQIQQHELGLFAIYDGHLGENVPAYLQKHLFSNILKEEEFWVDPNSSILKAYEKTDQAILSHSSDLGRGGSTAVTAILVNGQRLLLANVGDSRAVLLRGGEAVQMTVDHEPNTERCIIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIHDIIIDPNIDILILASDGLWKVMANQEAVDIARKIKDPLKAAKQLITEALQKESKDDISCIVVRFR 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29810283 29814106 - Sed0026805.2 Sed05g1602 714228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1602 270 CDD PP2Cc 21 269 IPR001932 -
Sed05g1602 270 Gene3D - 18 270 IPR036457 -
Sed05g1602 270 FunFam Probable protein phosphatase 2C 39 13 270 - -
Sed05g1602 270 SMART PP2C_4 14 267 IPR001932 -
Sed05g1602 270 ProSiteProfiles PPM-type phosphatase domain profile. 22 269 IPR001932 -
Sed05g1602 270 Pfam Protein phosphatase 2C 31 262 IPR001932 -
Sed05g1602 270 SMART PP2C_SIG_2 33 269 IPR001932 -
Sed05g1602 270 PANTHER PROTEIN PHOSPHATASE 18 267 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed05g1602 270 SUPERFAMILY PP2C-like 16 269 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1602 Sed-Chr5:29810283 Sed13g2131 Sed-Chr13:25963283 3.10E-133 dispersed
Sed05g1601 Sed-Chr5:29810283 Sed05g1602 Sed-Chr5:29810283 5.80E-151 tandem
Sed05g1602 Sed-Chr5:29810283 Sed05g1603 Sed-Chr5:29810283 1.30E-131 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1602 K17506 - csv:101213414 474.937