Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g1602 | ATGCTTCATACTCTCAGATCCGCGTTAGACTACGGTAAAGGAAGAAGCCATGAGGGGCTAATCAGGTATGGGTTCTGCCTGGTAAAAGGGAAAGCTAACCATCCCATGGAAGATTACCATGTTGCTAAGTTTGTTCAGATTCAACAACATGAGTTGGGGCTATTTGCTATTTATGATGGCCATTTAGGAGAAAATGTGCCTGCCTACTTACAAAAGCACTTGTTTTCTAATATTCTGAAAGAGGAAGAATTTTGGGTTGACCCGAACAGCTCCATCTTAAAAGCTTACGAAAAGACGGACCAGGCAATTCTTTCACATAGCTCTGACTTGGGTCGTGGCGGATCAACTGCTGTTACTGCTATTCTGGTTAATGGTCAACGGTTATTGCTGGCCAATGTTGGAGATTCACGCGCAGTTCTTTTGAGAGGGGGTGAAGCTGTACAGATGACGGTTGATCATGAGCCGAATACAGAACGCTGCATCATTGAGAATAAAGGTGGCTTTGTTTCGAATATGCCAGGAGATGTACCTCGAGTCAACGGCCAGCTTGCAGTTTCACGGGCATTCGGAGACAAGAGTCTGAAATCTCACCTGCGATCGGATCCTGACATACACGATATCATCATAGACCCCAACATCGATATATTAATTCTCGCCAGCGATGGTCTTTGGAAGGTAATGGCCAATCAAGAAGCTGTCGATATCGCTCGAAAAATTAAAGATCCTTTGAAGGCTGCTAAGCAGTTAATAACTGAGGCTTTGCAGAAAGAAAGTAAAGATGATATATCGTGCATTGTGGTTAGATTTAGGTGA | 813 | 43.79 | MLHTLRSALDYGKGRSHEGLIRYGFCLVKGKANHPMEDYHVAKFVQIQQHELGLFAIYDGHLGENVPAYLQKHLFSNILKEEEFWVDPNSSILKAYEKTDQAILSHSSDLGRGGSTAVTAILVNGQRLLLANVGDSRAVLLRGGEAVQMTVDHEPNTERCIIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIHDIIIDPNIDILILASDGLWKVMANQEAVDIARKIKDPLKAAKQLITEALQKESKDDISCIVVRFR | 270 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 29810283 | 29814106 | - | Sed0026805.2 | Sed05g1602 | 714228 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g1602 | 270 | CDD | PP2Cc | 21 | 269 | IPR001932 | - | |
Sed05g1602 | 270 | Gene3D | - | 18 | 270 | IPR036457 | - | |
Sed05g1602 | 270 | FunFam | Probable protein phosphatase 2C 39 | 13 | 270 | - | - | |
Sed05g1602 | 270 | SMART | PP2C_4 | 14 | 267 | IPR001932 | - | |
Sed05g1602 | 270 | ProSiteProfiles | PPM-type phosphatase domain profile. | 22 | 269 | IPR001932 | - | |
Sed05g1602 | 270 | Pfam | Protein phosphatase 2C | 31 | 262 | IPR001932 | - | |
Sed05g1602 | 270 | SMART | PP2C_SIG_2 | 33 | 269 | IPR001932 | - | |
Sed05g1602 | 270 | PANTHER | PROTEIN PHOSPHATASE | 18 | 267 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Sed05g1602 | 270 | SUPERFAMILY | PP2C-like | 16 | 269 | IPR036457 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1602 | Sed-Chr5:29810283 | Sed13g2131 | Sed-Chr13:25963283 | 3.10E-133 | dispersed | |
Sed05g1601 | Sed-Chr5:29810283 | Sed05g1602 | Sed-Chr5:29810283 | 5.80E-151 | tandem | |
Sed05g1602 | Sed-Chr5:29810283 | Sed05g1603 | Sed-Chr5:29810283 | 1.30E-131 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g1602 | K17506 | - | csv:101213414 | 474.937 |