Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1603 ATGGAAGATTACCATGTTGCTAAGTTTGTTCAGATTCAACAACATGAGTTGGGGCTATTTGCTATTTATGATGGCCATTTAGGAGAAAATGTGCCTGCCTACTTACAAAAGCACTTGTTTTCTAATATTCTGAAAGAGGAAGAATTTTGGGTTGACCCGAACAGCTCCATCTTAAAAGCTTACGAAAAGACGGACCAGGCAATTCTTTCACATAGCTCTGACTTGGGTCGTGGCGGATCAACTGCTGTTACTGCTATTCTGGTTAATGGTCAACGGTTATTGCTGGCCAATGTTGGAGATTCACGCGCAGTTCTTTTGAGAGGGGGTGAAGCTGTACAGATGACGGTTGATCATGAGCCGAATACAGAACGCTGCATCATTGAGAATAAAGGTGGCTTTGTTTCGAATATGCCAGGAGATGTACCTCGAGTCAACGGCCAGCTTGCAGTTTCACGGGCATTCGGAGACAAGAGTCTGAAATCTCACCTGCGATCGGATCCTGACATACACGATATCATCATAGACCCCAACATCGATATATTAATTCTCGCCAGCGATGGTCTTTGGAAGGTAATGGCCAATCAAGAAGCTGTCGATATCGCTCGAAAAATTAAAGATCCTTTGAAGGCTGCTAAGCAGTTAATAACTGAGGCTTTGCAGAAAGAAAGTAAAGATGATATATCGTGCATTGTGGTTAGATTTAGGTGA 708 43.08 MEDYHVAKFVQIQQHELGLFAIYDGHLGENVPAYLQKHLFSNILKEEEFWVDPNSSILKAYEKTDQAILSHSSDLGRGGSTAVTAILVNGQRLLLANVGDSRAVLLRGGEAVQMTVDHEPNTERCIIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIHDIIIDPNIDILILASDGLWKVMANQEAVDIARKIKDPLKAAKQLITEALQKESKDDISCIVVRFR 235
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 29810283 29812673 - Sed0026805.3 Sed05g1603 714229
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1603 235 SMART PP2C_SIG_2 4 234 IPR001932 -
Sed05g1603 235 ProSiteProfiles PPM-type phosphatase domain profile. 1 234 IPR001932 -
Sed05g1603 235 Gene3D - 1 235 IPR036457 -
Sed05g1603 235 FunFam Probable protein phosphatase 2C 39 1 235 - -
Sed05g1603 235 SUPERFAMILY PP2C-like 1 234 IPR036457 -
Sed05g1603 235 CDD PP2Cc 1 234 IPR001932 -
Sed05g1603 235 PANTHER PROTEIN PHOSPHATASE 1 232 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed05g1603 235 SMART PP2C_4 1 232 IPR001932 -
Sed05g1603 235 Pfam Protein phosphatase 2C 1 227 IPR001932 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1601 Sed-Chr5:29810283 Sed05g1603 Sed-Chr5:29810283 1.30E-131 dispersed
Sed05g1603 Sed-Chr5:29810283 Sed13g2130 Sed-Chr13:25963283 3.70E-114 dispersed
Sed05g1602 Sed-Chr5:29810283 Sed05g1603 Sed-Chr5:29810283 1.30E-131 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1603 K17506 - csv:101213414 414.461