Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1617 ATGGTAAAAACAGAACCAGAGGAGAACGTTGAATTTCGATGGGGCAAAAAGAAATCAATTGGTGGGAAGAAGAAGGACGTGACCTTTTATGAATCTTTTACTTATGATGGTGTAGAATATTTTCTTTATGACTCTGTGTACCTATTTAAGGATGGTGAACCAGAGCCTTACATTGGCAAAATTCTTAAAATCTGGCAGAATCCTGATAAAACAAAAAAAGTGAAAATTCTTTGGTTTTTTCGACCTCGTGAGATTCTTCATTATCTTGGAGCTGAAGACATATGGGATAAAGAAGTTTTATTGGCATGCGGTGATGGAATTGGCCTTGCCAATGTTAATCCTCTGGAAGTAATTGCTGGAAAGTGCAGCATTCTCTGTGTTTCAGATGATGACAGAAACCCACGACCTTCAGATGAGACGCTCAAAAAGGCCGATTTTGTATTTTTTCGTACATTTGATGTTGGAAAACTAGAGGTCTGCACTAAGATATGTGAAAAAATTGCAGGAGTAGAAGTTAAATTTTTACTCAATAAAGTAGATGCATCCGAAGATGTTAAGAGGACCGATAAGGATGGGAAAGATGCAAGTGGCATTGCAATTGTGAATACTGAATCAGAAGATCCTTCTGGACAGATCACTTCTAATGGAGAATTAAATTTGAAGACTAACGAAAGCTCTGTCGAGAAGTTCACAAAGGAAAATGTTGATTTGAAGGCTTCTCTTTCTATAGAGAAATCCTCCAATGAAGAGAAGTCCAGTGCTTGTGCGAGTGATGGTGGAAATGGATTGGCTAAAACCGGCAGCAAACAAGAAAACATCTTAGATGATAAGGTCTCTCAAAAGCTTAAAATTGATTCTAATGAGACATCGGGCAAAGATGTTCAAGCGCTAGCTAAGGACGTTGAAGGTAGAGTTAAAAATCCCAGGGACTCTGCTGAAGTTGAACATATGCCAGCGAAGAAGGCAAAGCTAGATAGTTCTGTTCAATTGTCTCTTGGAAAGACAAAGAATGACATTCAAAAGCCTTGCCTAAATCGCAATAATGGTGATATTCTGGCTTCCTCACCTAAAGTTCTTGTCTCTGAAGATGCTTCCAAAACCAAAAATGTAAAAGATTCTCATGGAACAAAAGGCAGCCTAAAGAAGCCCAAGCTAGATGGAAAGCCAACAAAGGTTTCTAATGGCAATAACCTAAAGGCATCTTCCCTTTCAGTCACAAACTGCAAAACGGATGGTCGAATTATGGAAGTTACTAGAAGGCCAGATGCTGATAGAAGCAGATGGTTCAAGGGACTTCCGTGGGAAGAAAGAATAAAAAATGCACATGAGCAAGGAACACTTGTTCTGATTCAGAATTTGGATCCTGCTTACACTTCAGGTGAAGTGGAGGATATTGTTTGGCATGCCTTCAACGAGAGTTGCACAGCTAAGATGATTCAGCGTACTACAATTTCTATGCCTCACATAGGTCAAGCTTATGTTGTATTCAAAACTAAGGAAGCAGCAGAGAAAGTGGTTAGAAAACTAGATGAAGGTTGCTTATTACTTGCCAATGGGGGTGCTCTTGTTGGTAGCTTTGCAACTCCTAATCTCTCGTCAAAGAAACAAACTTTTTTGGGGCATCACAGTATCGATAAGCTAAGACATCAAATGCAACGTGAGATGAAAGGAGCTGTATCAAACTCGCATTGCTCCCAGCCAAATACAATCGAATATGACATGGCCATGGAGTGGTCTTTACTCCAAGAAAGATCAAAGATTTCCTGCAATAAGTTATTCAAGCAACAAGAAGAGGAGTTCCGAAAACTCAAGAGCAAGCTGAAATCTAGATGA 1833 39.5 MVKTEPEENVEFRWGKKKSIGGKKKDVTFYESFTYDGVEYFLYDSVYLFKDGEPEPYIGKILKIWQNPDKTKKVKILWFFRPREILHYLGAEDIWDKEVLLACGDGIGLANVNPLEVIAGKCSILCVSDDDRNPRPSDETLKKADFVFFRTFDVGKLEVCTKICEKIAGVEVKFLLNKVDASEDVKRTDKDGKDASGIAIVNTESEDPSGQITSNGELNLKTNESSVEKFTKENVDLKASLSIEKSSNEEKSSACASDGGNGLAKTGSKQENILDDKVSQKLKIDSNETSGKDVQALAKDVEGRVKNPRDSAEVEHMPAKKAKLDSSVQLSLGKTKNDIQKPCLNRNNGDILASSPKVLVSEDASKTKNVKDSHGTKGSLKKPKLDGKPTKVSNGNNLKASSLSVTNCKTDGRIMEVTRRPDADRSRWFKGLPWEERIKNAHEQGTLVLIQNLDPAYTSGEVEDIVWHAFNESCTAKMIQRTTISMPHIGQAYVVFKTKEAAEKVVRKLDEGCLLLANGGALVGSFATPNLSSKKQTFLGHHSIDKLRHQMQREMKGAVSNSHCSQPNTIEYDMAMEWSLLQERSKISCNKLFKQQEEEFRKLKSKLKSR 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30072119 30081373 + Sed0003524.1 Sed05g1617 714243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1617 610 ProSiteProfiles BAH domain profile. 38 163 IPR001025 GO:0003682(InterPro)
Sed05g1617 610 CDD RRM_SF 448 510 - -
Sed05g1617 610 Pfam BAH domain 44 132 IPR001025 GO:0003682(InterPro)
Sed05g1617 610 FunFam Bromo-adjacent homology (BAH) domain-containing protein 8 159 - -
Sed05g1617 610 SMART BAH_4 38 161 IPR001025 GO:0003682(InterPro)
Sed05g1617 610 MobiDBLite consensus disorder prediction 362 399 - -
Sed05g1617 610 MobiDBLite consensus disorder prediction 186 220 - -
Sed05g1617 610 Gene3D - 2 162 IPR043151 -
Sed05g1617 610 Gene3D - 434 530 IPR012677 -
Sed05g1617 610 MobiDBLite consensus disorder prediction 364 388 - -
Sed05g1617 610 SUPERFAMILY RNA-binding domain, RBD 438 516 IPR035979 GO:0003676(InterPro)
Sed05g1617 610 PANTHER PROTEIN ANTI-SILENCING 1 1 608 - GO:0003723(PANTHER)|GO:1905642(PANTHER)
Sed05g1617 610 MobiDBLite consensus disorder prediction 295 322 - -
Sed05g1617 610 MobiDBLite consensus disorder prediction 202 220 - -
Sed05g1617 610 MobiDBLite consensus disorder prediction 248 272 - -
Sed05g1617 610 MobiDBLite consensus disorder prediction 284 328 - -
Sed05g1617 610 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 446 529 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1617 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g2117 Sed-Chr13:25848684 Sed05g1617 Sed-Chr5:30072119 1.40E-279 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g361 Blo01g01711 . . . . Bpe02g00232 . Bma01g02490 . . Cma01g01593 . Car09g00478 . . . Cpe06g00414 . . . . . . . . . . . . . . Cone4ag1541 . . . Lsi04g02217 . . . . . . . . . . . Sed05g1617 Cmo01g01641 Cmo09g00537 . . Car01g01212 . . Cpe02g00384 Bhi09g02408 Tan01g3769 Cmetu04g2116 . Hepe01g2111 Mch11g0649 . . . . . . . . . . . Cme04g00306
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004249 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 43