Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1638 ATGGCGGTCGATCTCATGAACTTTCCAAAAATGGAAGATCAAATTGCCATTCAAGAAGCTGCCTCGCAAGGATTAACGAGCATGGAGCATCTAATCCGCCTTCTCTCTCACAAACACCCTTCAAACCACGCCGATTGCTCCGATCTAACCGACGCAACCGTTTCCAAGTTCAAGAAAGTGATCTCGATTCTCAATCGCACCGGCCACGCCAGGTTCCGGCGAGGTCCGGTTTCTAATCCATTTCCTCAAAGTCAGCCGATGAATCTCGCTCCGGCGAAGGCTGCTCCGGCGGCGAGTTTTCTCCAGTCGCCCCCTCAGAGCATGACTCTCGATTTCACCAAGCCGAATATTCTCAACTCTAACCCTAACGGAACGGAGCTGGAGACGTTCAGCGTCTCTTCGAGCTCGTCTTTTATGTCCTCTGCTATTACCGGCGACGGCAGCGTATCCAACGGAAAGTTAGGATCGTCGATCTTTATGGCACCGGCGGCCACTGTTTCCGGCGGGAAGCCGCCGCTCTCGGCGGCGCCGTACAAGAAGAGGTGTCACGAACACGATCATTCCGAGGATTTTTCCGGGAAATTCTCCGGTTCCACTTCTACTTCCGGCAAGTGCCATTGCTCTAAGAGAAGAAAGAATCGTATGAAGAAGACGATTCGAGTCCCGGCGATTAGTTCAAAAGTCGCCGACATTCCGCCGGACGAATACTCGTGGAGAAAGTACGGTCAGAAGCCGATCAAGGGATCTCCATACCCACGGGGATATTACAAGTGTAGTTCAATGAGGGGATGTCCGGCGAGGAAACACGTGGAGAGAGATCCGAAAGATCCGGCGATGTTGATTGTAACGTACGAAGGAGAGCACCGCCATTTGCAGAGCGCGTTGCCGGGAAATATGGCCGCCGGAATAGGTTTAGCTTTTGAGTCAACTTGA 933 52.52 MAVDLMNFPKMEDQIAIQEAASQGLTSMEHLIRLLSHKHPSNHADCSDLTDATVSKFKKVISILNRTGHARFRRGPVSNPFPQSQPMNLAPAKAAPAASFLQSPPQSMTLDFTKPNILNSNPNGTELETFSVSSSSSFMSSAITGDGSVSNGKLGSSIFMAPAATVSGGKPPLSAAPYKKRCHEHDHSEDFSGKFSGSTSTSGKCHCSKRRKNRMKKTIRVPAISSKVADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERDPKDPAMLIVTYEGEHRHLQSALPGNMAAGIGLAFEST 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30297805 30299930 + Sed0028224.1 Sed05g1638 714264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1638 310 SUPERFAMILY WRKY DNA-binding domain 230 290 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1638 310 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 291 IPR044810 GO:0003700(InterPro)
Sed05g1638 310 ProSiteProfiles WRKY domain profile. 227 290 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1638 310 Pfam Plant zinc cluster domain 179 230 IPR018872 -
Sed05g1638 310 Gene3D WRKY domain 214 292 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1638 310 FunFam WRKY transcription factor 65 216 293 - -
Sed05g1638 310 SMART WRKY_cls 232 292 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1638 310 Pfam WRKY DNA -binding domain 234 290 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2685 Sed-Chr1:21514376 Sed05g1638 Sed-Chr5:30297805 1.20E-54 dispersed
Sed05g1638 Sed-Chr5:30297805 Sed13g2094 Sed-Chr13:25655946 8.50E-111 dispersed
Sed05g1638 Sed-Chr5:30297805 Sed05g1639 Sed-Chr5:30297805 3.00E-140 tandem
Sed08g0447 Sed-Chr8:2773120 Sed05g1638 Sed-Chr5:30297805 3.40E-74 transposed
Sed13g2093 Sed-Chr13:25655946 Sed05g1638 Sed-Chr5:30297805 8.70E-143 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38540 PF03106 WRKY 7.50E-26 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1638 - - - 0.0