Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1639 ATGGCGGTCGATCTCATGAACTTTCCAAAAATGGAAGATCAAATTGCCATTCAAGAAGCTGCCTCGCAAGGATTAACGAGCATGGAGCATCTAATCCGCCTTCTCTCTCACAAACACCCTTCAAACCACGCCGATTGCTCCGATCTAACCGACGCAACCGTTTCCAAGTTCAAGAAAGTGATCTCGATTCTCAATCGCACCGGCCACGCCAGGTTCCGGCGAGGTCCGGTTTCTAATCCATTTCCTCAAAGTCAGCCGATGAATCTCGCTCCGGCGAAGGCTGCTCCGGCGGCGAGTTTTCTCCAGTCGCCCCCTCAGAGCATGACTCTCGATTTCACCAAGCCGAATATTCTCAACTCTAACCCTAACGGAACGGAGCTGGAGACGTTCAGCGTCTCTTCGAGCTCGTCTTTTATGTCCTCTGCTATTACCGGCGACGGCAGCGTATCCAACGGAAAGTTAGGATCGTCGATCTTTATGGCACCGGCGGCCACTGTTTCCGGCGGGAAGCCGCCGCTCTCGGCGGCGCCGTACAAGAAGAGGTGTCACGAACACGATCATTCCGAGGATTTTTCCGGGAAATTCTCCGGTTCCACTTCTACTTCCGGCAAGTGCCATTGCTCTAAGAGAAGAAAGAATCGTATGAAGAAGACGATTCGAGTCCCGGCGATTAGTTCAAAAGTCGCCGACATTCCGCCGGACGAATACTCGTGGAGAAAGTACGGTCAGAAGCCGATCAAGGGATCTCCATACCCACGGTGA 762 52.89 MAVDLMNFPKMEDQIAIQEAASQGLTSMEHLIRLLSHKHPSNHADCSDLTDATVSKFKKVISILNRTGHARFRRGPVSNPFPQSQPMNLAPAKAAPAASFLQSPPQSMTLDFTKPNILNSNPNGTELETFSVSSSSSFMSSAITGDGSVSNGKLGSSIFMAPAATVSGGKPPLSAAPYKKRCHEHDHSEDFSGKFSGSTSTSGKCHCSKRRKNRMKKTIRVPAISSKVADIPPDEYSWRKYGQKPIKGSPYPR 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30297805 30299930 + Sed0028224.2 Sed05g1639 714265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1639 253 ProSiteProfiles WRKY domain profile. 227 253 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1639 253 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 253 IPR044810 GO:0003700(InterPro)
Sed05g1639 253 SUPERFAMILY WRKY DNA-binding domain 230 253 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1639 253 Gene3D WRKY domain 211 253 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1639 253 MobiDBLite consensus disorder prediction 202 226 - -
Sed05g1639 253 Pfam WRKY DNA -binding domain 234 253 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1639 253 Pfam Plant zinc cluster domain 179 230 IPR018872 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1639 Sed-Chr5:30297805 Sed13g2093 Sed-Chr13:25655946 6.90E-111 dispersed
Sed05g1638 Sed-Chr5:30297805 Sed05g1639 Sed-Chr5:30297805 3.00E-140 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38541 PF10533 Plant_zn_clust 5.10E-20 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1639 - - - 0.0