Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1641 ATGGCACCAGAATATTTCGAAAGTATTCTGGGAGACAAAGGTTGTGATGCTTCTGTGCTTCTTCATTCAAATAACCACACTTCTGAGAAAGATAATGCTGAGAACCTTTCGCTCGCCGGAGACGGGTTCGACACCGTGATCAAAGCTAAGGCCGCAATCGATAACGTGCCAGGATGTAAGAACAAGGTCTCTTGTGCTGACATATTGGCCTTGGCTACTAGAGATGTTGTAGTTTTGACAAGAAAGTGCGTTCGACACCATCTTCCTTTACCCGAATTCGGGTTAGATCAGCTCAATGGCATGTTTGCAAGACATGGTCTAACTCAAACAGATATGATTGCACTCTCAGTTGCACATACAATTGGATTCTCACATTGCAAGCACTTTTCCAAAAGGCTATATAGCTTCCATAGCACACAACGAGTCGATCCGACGTTCAATCGGACATATGTCGACGAGCTGAAGAGGGAATGCCCGAGAAACGTCGACCAGAGGATCGCTGTCGACATGGACTCGACATTGTCATTCTCGTTTGATAATGTGTATTTCAAGAATCTGCAGATGGGGAAAGGGTTGTTCACCTCAGACCAACAGGCTTTTGTTGTTGCAATGACAAAGCTTGGAAGAGTGGGAGTCAAAACAAAAAACCAAGGGGAAATTAGAATTGATTGTTCCTCAGTGAACTAA 687 44.25 MAPEYFESILGDKGCDASVLLHSNNHTSEKDNAENLSLAGDGFDTVIKAKAAIDNVPGCKNKVSCADILALATRDVVVLTRKCVRHHLPLPEFGLDQLNGMFARHGLTQTDMIALSVAHTIGFSHCKHFSKRLYSFHSTQRVDPTFNRTYVDELKRECPRNVDQRIAVDMDSTLSFSFDNVYFKNLQMGKGLFTSDQQAFVVAMTKLGRVGVKTKNQGEIRIDCSSVN 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30313778 30319737 + Sed0003218.1 Sed05g1641 714267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1641 228 PANTHER - 198 228 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1641 228 SUPERFAMILY Heme-dependent peroxidases 13 228 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1641 228 Gene3D Peroxidase, domain 2 89 198 - -
Sed05g1641 228 Gene3D - 208 228 - -
Sed05g1641 228 FunFam Peroxidase 89 217 - -
Sed05g1641 228 PRINTS Haem peroxidase superfamily signature 171 186 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1641 228 PRINTS Haem peroxidase superfamily signature 63 80 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1641 228 PRINTS Plant peroxidase signature 1 21 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1641 228 PRINTS Plant peroxidase signature 41 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1641 228 PRINTS Plant peroxidase signature 185 202 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1641 228 PRINTS Plant peroxidase signature 62 72 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1641 228 PRINTS Plant peroxidase signature 169 184 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1641 228 ProSiteProfiles Plant heme peroxidase family profile. 13 228 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1641 228 Pfam Peroxidase 13 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1641 228 Gene3D - 13 81 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1641 Sed-Chr5:30313778 Sed13g2086 Sed-Chr13:25598754 2.00E-101 dispersed
Sed13g2085 Sed-Chr13:25598754 Sed05g1641 Sed-Chr5:30313778 9.90E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1641 K00430 - csv:101218982 377.481