Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1642 ATGGCAAACCCTATCACTCTCCAAGAGATTAGAAACGAGTCCGTCGACCTGGAACGTATCCCAATTGAGGAAGTGTTCGAGAAGTTAAAATGCTCAAAAGAAGGTCTAAGCGCAGAGGAAGGAGCCAATCGGCTCCAAGTTTTCGGGCCCAACAAACTTGAAGAGAAAAAAGAAAACAAGATTCTGAAGTTTTTGGGTTTCATGTGGAATCCCCTTTCTTGGGTGATGGAAGCGGCGGCGGTGATGGCGATTGTGTTGGCCAACGGGGGTGGACGGCCACCCGACTGGCCGGATTGTGTGGGAGTTATTGTGCTGCTTATCATCAACTCAACCATCAGTTTTTTGGAAGAAAACAATGCTGGAAATGCAGCTGCAGCCCTTATGGCTGGCCTTGCTCCCAAAACTAAGATCCTAAATCTTTGCAATTCAAACGAAGCTGTCAGGAAACAAGTTCATGGAGTGATCGATAAGTTTGCCGATTCTGGACTACGATCCCTTGGTGTTGCTAGACAGGAAGTACCTGAAAAAACCAAGGAAAGTCAAGGAAAACCATGGCAACTAGTTGGTTTGTTAGCTCTTTTCGATCCTCCGAGGCACGATAGTGCAGAAACCATCCGAAGAGCTCTACACCTTGGAGTGAATGTTAAGATGATTACTGGTGACCAACTGGCCATTGCCAAGGAAACCGGTCGGAGACTCGGAATGGGATCGAACATGTACCCTTCTTCTGCATTACTTAGTCAAGATAGGAGTGTATCAGCAGATAGCCTTCCTATTGATGAGTTGATTGAAACGGCTGACGGATTTGCTGGCGTATTTCCAGAACACAAATATGAAATTGTGAGAAGGTTACAAGAGAAGAAACACATTTGTGGAATGACTGGTGATGGTGTAAATGATGCCCCTGCACTAAAAAAGGCCGATATCGGAATCGCTGTTGATGATGCAACTGATGCGGCTAGGAGTGCTTCCGACATCGTCCTTACCGAACCTGGATTGAGTGTCATCATCAGTGCAGTACTGACCAGCAGGGCTATTTTCCGGAGAATGAAGAACTATACGATTTATGCAGTTTCCATCACCATTCGTATAGTGTTTGGCTTTATGTTGATTGCTTTGATTTGGAAGTTTGATTTTGCTCCATTCATGGTTTTAATTATAGCTATTCTAAACGATGGAACAATCATGACGATTTCTAAAGATCGAGTCAAGGCTTCTCCACAGCCCGACAGTTGGAAGTTGAAGGAAATTTTCGCCACCGGCATTGTGTTAGGAGGATACTTGGCACTGATGACAGTGTTGTTCTTCTGGATTGCGAGAGACACCAACTTTTTCTCTAACGTGTTCGGCGTCGTATCCCTGAGAAACGATGACCGGAGAATGATGTCGGCATTGTACCTACAAGTTAGTATCATAAGTCAAGCCCTTATTTTCGTCACAAGGTCTCGAAGTTGGTCTGTCACAGAACGTCCCGGACTTCTCTTAGTGGGCGCTTTCGTAGTTGCCCAGCTTGTTGCAACTATAATATCAGTGTATGCAAGCATTCCTTTTGCAAGAACAAAAGGCACTGGCTGGGGATGGGCTGGTGTGATCTGGTTGTACAGTTTCATAACTTATGTCCCTCTTGATATTCTCAAATTTGCCACTCGCTATGTCCTTAGTGGAAGAGCTTGGAACAACCTTTTGCAGAATAAGACTGCTTTCACAACAAAGAAAGATTATGGAAAAGAAGAGAGGGAAGCACAATGGGCTACCACACAAAGGACTCTACATGGTCTTCAACCACCTCAAACCACCAACACTCTCTCTGATGGGAACAATGGTGGGGAGGTTTCCGAGATCGCCGAGCAAGCCCGACGACGTGCTGAAATCGCAAGGCTCCGCGAGTTGCACACTCTAAAAGGTCGGGTCGAGTCCGTGGTGAAGTTGAAAGGATTAGACATCAAGACGATTAATCAACATTACACGGTCTAA 1974 45.54 MANPITLQEIRNESVDLERIPIEEVFEKLKCSKEGLSAEEGANRLQVFGPNKLEEKKENKILKFLGFMWNPLSWVMEAAAVMAIVLANGGGRPPDWPDCVGVIVLLIINSTISFLEENNAGNAAAALMAGLAPKTKILNLCNSNEAVRKQVHGVIDKFADSGLRSLGVARQEVPEKTKESQGKPWQLVGLLALFDPPRHDSAETIRRALHLGVNVKMITGDQLAIAKETGRRLGMGSNMYPSSALLSQDRSVSADSLPIDELIETADGFAGVFPEHKYEIVRRLQEKKHICGMTGDGVNDAPALKKADIGIAVDDATDAARSASDIVLTEPGLSVIISAVLTSRAIFRRMKNYTIYAVSITIRIVFGFMLIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKASPQPDSWKLKEIFATGIVLGGYLALMTVLFFWIARDTNFFSNVFGVVSLRNDDRRMMSALYLQVSIISQALIFVTRSRSWSVTERPGLLLVGAFVVAQLVATIISVYASIPFARTKGTGWGWAGVIWLYSFITYVPLDILKFATRYVLSGRAWNNLLQNKTAFTTKKDYGKEEREAQWATTQRTLHGLQPPQTTNTLSDGNNGGEVSEIAEQARRRAEIARLRELHTLKGRVESVVKLKGLDIKTINQHYTV 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30320985 30327993 - Sed0001952.1 Sed05g1642 714268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1642 657 Pfam haloacid dehalogenase-like hydrolase 153 308 - -
Sed05g1642 657 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Sed05g1642 657 PRINTS H+-transporting ATPase (proton pump) signature 266 282 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed05g1642 657 PRINTS H+-transporting ATPase (proton pump) signature 325 350 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed05g1642 657 PRINTS H+-transporting ATPase (proton pump) signature 294 310 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed05g1642 657 PRINTS H+-transporting ATPase (proton pump) signature 151 169 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed05g1642 657 PRINTS H+-transporting ATPase (proton pump) signature 466 487 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed05g1642 657 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Sed05g1642 657 Gene3D - 195 331 IPR023214 -
Sed05g1642 657 NCBIfam HAD-IC family P-type ATPase 269 384 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed05g1642 657 PRINTS P-type cation-transporting ATPase superfamily signature 294 313 - -
Sed05g1642 657 PRINTS P-type cation-transporting ATPase superfamily signature 317 329 - -
Sed05g1642 657 PRINTS P-type cation-transporting ATPase superfamily signature 189 200 - -
Sed05g1642 657 PRINTS P-type cation-transporting ATPase superfamily signature 211 221 - -
Sed05g1642 657 SUPERFAMILY HAD-like 148 341 IPR036412 -
Sed05g1642 657 Gene3D - 608 657 - -
Sed05g1642 657 Gene3D - 137 194 IPR023299 GO:0000166(InterPro)
Sed05g1642 657 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 553 IPR023298 -
Sed05g1642 657 PANTHER CALCIUM-TRANSPORTING ATPASE 136 581 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Sed05g1642 657 FunFam Plasma membrane ATPase 186 342 - -
Sed05g1642 657 Gene3D - 332 520 - -
Sed05g1642 657 Gene3D - 95 132 - -
Sed05g1642 657 FunFam ATPase 4 plasma membrane-type 284 521 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1642 Sed-Chr5:30320985 Sed11g0557 Sed-Chr11:5847127 8.30E-273 dispersed
Sed03g1541 Sed-Chr3:9783882 Sed05g1642 Sed-Chr5:30320985 3.00E-276 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1642 K01535 - csv:101219224 881.322