Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1647 ATGCCGGGACTCACCTGTAATGCCTGTAACAAAGAATTTCTAGACGCTGAGGAGCAGAAGCTTCACTACAAATCCGAATGGCATCGATACAATCTTAAGCGCAAGGTAGCCAATGTTCCTGGGGTTACAGAGGCATTATTTTTAGCTAGACAATCTGCTGCTGCAGCACAAGAGAATGCCAAATCAAGAGAAACTTCAATGTTATACTCTTGTGGTCTTTGCAGTAAAGCTTATAGGAGTGCCCAGGCTCATGCCCAACATCTTAAATCTAGGAGTCACATCATTCGAGCTTCGCAAGGAACACATGATCAAGAAGTTGAAAAGCCAATAATTAAGCCTCTTCCTCAGCGAATTTCTAATAAGGCACCCCAGCAAAATGAGGAGGAAGAGAGTGAGGAGGAGTGGGAAGAAGTTGATCCTGACGAAGACATGATTGATGAGGATGAGAGTGAGGATGATGATTCTGATCCCATTGAAGTGGACTTGAATCCATCATGCTGCTTCATGTGTGATCTAGAGCACGATACCATCGATAGCTGCATGGTCCACATGCTTAAGCAACACGGATTCTTCATTCCTGATGTCGAATATTTGAAGGACCCGAAAGGCTTTCTTACATACCTTGGCCTGAAGGTGACAAGGGATTTCAGGTGTCTGTATTGCAATGATAATTGTCTTCCTTTTAGCAGCTTGGAAGCTGTTAGGAAGCATATGGAAGCGAAAAGCCATTGCAAAGTGCATTATGGTGATGGAGATGAGAATGAAGAAGTAGAATTGGAAGATTTTTATGATTACAGTAGCAGTTATGTGGATGGAAGTGGCAACCAGATAGTAGCATCAGGGGATGATGGGGCCAATTCTGTCCAACTTGGTCGTGGTGGAGCTGAACTCATCTTAGTTCAAAGTAGTACTAGCGAACGACAATCGACCAAAACACTTGGTTCCAGGCAGTTTCTTCGTTATTATCGCCAAAAACCACGACCGTCTCCTACAAATGGGGAAGCAATAACTGCTGCATTGGCAGCAAGGTACAGAAGCATGGGATTGGCAACTGTTCAGTCAAGGGAAAGGATGATCAGGATGAAGGTGATGAAAGAAATCAATCGAACCGGATTGGAAGCGATGCGTACCAAAGTCGGATTGAAAAACAACGTTATCCGAAACCTGCCGAAGAATGTTCCACATTAG 1188 44.02 MPGLTCNACNKEFLDAEEQKLHYKSEWHRYNLKRKVANVPGVTEALFLARQSAAAAQENAKSRETSMLYSCGLCSKAYRSAQAHAQHLKSRSHIIRASQGTHDQEVEKPIIKPLPQRISNKAPQQNEEEESEEEWEEVDPDEDMIDEDESEDDDSDPIEVDLNPSCCFMCDLEHDTIDSCMVHMLKQHGFFIPDVEYLKDPKGFLTYLGLKVTRDFRCLYCNDNCLPFSSLEAVRKHMEAKSHCKVHYGDGDENEEVELEDFYDYSSSYVDGSGNQIVASGDDGANSVQLGRGGAELILVQSSTSERQSTKTLGSRQFLRYYRQKPRPSPTNGEAITAALAARYRSMGLATVQSRERMIRMKVMKEINRTGLEAMRTKVGLKNNVIRNLPKNVPH 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30351705 30355711 + Sed0010708.1 Sed05g1647 714273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1647 395 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Sed05g1647 395 SMART ZnF_U1_5 66 100 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Sed05g1647 395 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Sed05g1647 395 ProSitePatterns Zinc finger C2H2 type domain signature. 71 93 IPR013087 -
Sed05g1647 395 SUPERFAMILY beta-beta-alpha zinc fingers 151 230 IPR036236 -
Sed05g1647 395 MobiDBLite consensus disorder prediction 127 156 - -
Sed05g1647 395 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Sed05g1647 395 PANTHER ZINC FINGER PROTEIN 622 1 393 IPR040025 GO:0030687(PANTHER)|GO:0042273(PANTHER)
Sed05g1647 395 SMART c2h2final6 216 243 IPR013087 -
Sed05g1647 395 SMART c2h2final6 4 28 IPR013087 -
Sed05g1647 395 SMART c2h2final6 165 188 IPR013087 -
Sed05g1647 395 SMART c2h2final6 69 93 IPR013087 -
Sed05g1647 395 MobiDBLite consensus disorder prediction 98 156 - -
Sed05g1647 395 Pfam C2H2 type zinc-finger (2 copies) 167 269 IPR041661 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g2081 Sed-Chr13:25576375 Sed05g1647 Sed-Chr5:30351705 3.90E-185 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38542 PF12756 zf-C2H2_2 2.20E-25 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1647 K14816 - csv:101219700 659.062