Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g1649 | ATGCCTCGTAAGATGAGTGATTATGATGAAGATTACGAGGATTACAACGATTATGACGATAACGATTACGACAGAGAAGAAAAAGAAAAAATACCTGAGGCTAAGGAAGAAACAAAGGGGTGTAAGCTTTGGCGATGTCCGATTTGCGCTTACAACAATGAAGATGGTTTTTCTGCCTGTGATATATGCGGGGTTCTGCGCGACCCTCTGGTCAAGAACATCAATACCTGTGATGACAGGATAGTATTGTCTTCGGACGTCAATAAGGAAGGTGCAAACGATGCTACATTGACTTCAAAAAGTGCACATGGCTCGTCGACTGTATTGCCAAGCAGCAAATTAGGCAGCGTAGGAGATACAAAATTGAGTACCAAAAGTTCAGACAGCTCAAGCACCACAATTAGAAAAAGTGCATTGGCCATTGAAGAGCACAATACGTCTATTAATGTAACAGAAAATTTACAATCAAGTGGTAACAGGTCGTCAAGTACTTCCACGTCAAAGTCGGCAGGAAAAATTTACAGCATGGATGAGAACAGTAACCCTTCTGTCGAGCGAGAAAATCCACAAAGTCTTGCACGTAGTCTGAACAACTTGGTTCTAAATGTTAAATCTGCCTATGCAAATTATATTAGTGGGCTAGGAAAAACATCAGATGTGCAGTATAAGCATGATCAATGGATGCTACCAGATAAAGCTGTAGATACTTTGACCCAGTTGAATCTTGCTATAGTGGGTCATGTCGATTCTGGAAAATCTACTCTCTCAGGAAGACTTTTGCACCTATTAGGACGTGTCTCCAAAAAAGAAATGCACAAATATGAAAAAGAATCAAAGTCCTTGGGCAAGGGTTCATTTGCTTATGCCTGGGCACTGGATGAGAGCACAGAAGAAAGAGAGAGGGGAATAACTATGAATGTCGGTGTTGCTTATTTTGACTCTAAAAGCTATCATGTTGTCGTGCTCGACTCCCCGGGCCATAAAGATTTTGTTCCAAACTTGATATCGGGGGCAACACAAGCCGACGCTGCAGTTCTTGTTATAGATGCATCTGTTGGTGCATTTGAAGCGGGTATGGACAGTTCGAAGGGGCAAACGAGGGAACATGTGAAATTAATTAGGAGCTTTGGTGTAGATCAGATCATTGTTGTAGTTAACAAAATGGATGTGGTTCAGTATTCCAAAGATCGCTATGACTTTATTACGCAGCAAGTTGGAAAATTTTGTCGTACTTGTGGTTATAAAGATTCATCATTGATTTTGATTCCATTGAGTGCCATGGCTAATCAAAATCTGGTGGCTGCCCCCTCTGATTCTCGATTGCTGTCCTGGTATCGTGGACCAAATTTTTTGGAGGCAATTGATTCCCTTCAACCACCCAGTAGAGATTTCTCTAAGCCACTGCTTATGCCGATATGTGATGCCGGTCGATCACATTCATTAGGACAAGTGTCTGCGTGCGGAAAACTAGCAGCTGGAGCTCTCAAGTCTGGATCTAAGGTTCTAGTCATGCCATCCGGAGATAAAGGCACTGTGCGCAGTTTGGAATGCAATTCTCAGGCTTGGAAAATCGCAAGAGCAGGGGACAGCGTGACTGTTAGTCTTCAAGGAGTTGAAGCAAGTAGCGTGATGGCTGGTGGTGTCCTATGCCATCCTGATTTTCCTGTTGCTGTTGCAAAGCATTTGGAATTGAAGATTGTTACCTTGGAATTCGCATCTCCGATATTATTTGGATCTCAGTTGGAAATTCATGTACACCATGTGAAGGAGGCTGCTAGAGTTACAAAGATAGTGTCATTGCTCGATTCGAAGACGGGAAAGGTCGCGAAGAAGTCACCACGGTGCCTCAGTGCTAAACAGAGTGCAGTGATCGAGGTCGTTTTGCAAAGTCCTGTGTGCGTGGAAGTGTTCTCGACCAGTCGAGCTCTCGGGCGAGTATTTCTAAGAGCAATGGGCAGGACTATAGCTGTCGGCGTTGTGACCCAACTAATTGGAGATACTGAACAATAG | 2010 | 43.48 | MPRKMSDYDEDYEDYNDYDDNDYDREEKEKIPEAKEETKGCKLWRCPICAYNNEDGFSACDICGVLRDPLVKNINTCDDRIVLSSDVNKEGANDATLTSKSAHGSSTVLPSSKLGSVGDTKLSTKSSDSSSTTIRKSALAIEEHNTSINVTENLQSSGNRSSSTSTSKSAGKIYSMDENSNPSVERENPQSLARSLNNLVLNVKSAYANYISGLGKTSDVQYKHDQWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSKKEMHKYEKESKSLGKGSFAYAWALDESTEERERGITMNVGVAYFDSKSYHVVVLDSPGHKDFVPNLISGATQADAAVLVIDASVGAFEAGMDSSKGQTREHVKLIRSFGVDQIIVVVNKMDVVQYSKDRYDFITQQVGKFCRTCGYKDSSLILIPLSAMANQNLVAAPSDSRLLSWYRGPNFLEAIDSLQPPSRDFSKPLLMPICDAGRSHSLGQVSACGKLAAGALKSGSKVLVMPSGDKGTVRSLECNSQAWKIARAGDSVTVSLQGVEASSVMAGGVLCHPDFPVAVAKHLELKIVTLEFASPILFGSQLEIHVHHVKEAARVTKIVSLLDSKTGKVAKKSPRCLSAKQSAVIEVVLQSPVCVEVFSTSRALGRVFLRAMGRTIAVGVVTQLIGDTEQ | 669 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 30390127 | 30395535 | - | Sed0003669.1 | Sed05g1649 | 714275 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g1649 | 669 | PANTHER | TRANSLATION FACTOR | 238 | 661 | IPR050100 | GO:0003924(PANTHER)|GO:0006412(PANTHER) | |
Sed05g1649 | 669 | Pfam | GTP-eEF1A C-terminal domain-like | 562 | 661 | IPR054696 | - | |
Sed05g1649 | 669 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 560 | 664 | IPR009001 | - | |
Sed05g1649 | 669 | CDD | EF1_alpha | 241 | 460 | - | - | |
Sed05g1649 | 669 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 237 | 462 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed05g1649 | 669 | Pfam | Elongation factor Tu GTP binding domain | 240 | 457 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed05g1649 | 669 | Gene3D | Translation factors | 558 | 667 | - | - | |
Sed05g1649 | 669 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Sed05g1649 | 669 | FunFam | Translation elongation factor EF-1 | 464 | 554 | - | - | |
Sed05g1649 | 669 | Gene3D | Translation factors | 465 | 554 | - | - | |
Sed05g1649 | 669 | CDD | HBS1_C_III | 555 | 663 | - | - | |
Sed05g1649 | 669 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 239 | 475 | IPR027417 | - | |
Sed05g1649 | 669 | FunFam | Translation elongation factor Tu | 220 | 461 | - | - | |
Sed05g1649 | 669 | MobiDBLite | consensus disorder prediction | 94 | 190 | - | - | |
Sed05g1649 | 669 | Pfam | Elongation factor Tu domain 2 | 488 | 550 | IPR004161 | GO:0005525(InterPro) | |
Sed05g1649 | 669 | FunFam | elongation factor 1-alpha isoform X4 | 558 | 667 | - | - | |
Sed05g1649 | 669 | PRINTS | GTP-binding elongation factor signature | 300 | 308 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed05g1649 | 669 | PRINTS | GTP-binding elongation factor signature | 241 | 254 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed05g1649 | 669 | PRINTS | GTP-binding elongation factor signature | 336 | 347 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed05g1649 | 669 | PRINTS | GTP-binding elongation factor signature | 320 | 330 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed05g1649 | 669 | PRINTS | GTP-binding elongation factor signature | 381 | 390 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed05g1649 | 669 | Gene3D | - | 230 | 461 | IPR027417 | - | |
Sed05g1649 | 669 | ProSitePatterns | Zinc finger RanBP2-type signature. | 44 | 63 | IPR001876 | - | |
Sed05g1649 | 669 | SUPERFAMILY | Translation proteins | 459 | 554 | IPR009000 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1649 | Sed-Chr5:30390127 | Sed09g0179 | Sed-Chr9:1445372 | 1.60E-74 | dispersed | |
Sed13g2080 | Sed-Chr13:25561250 | Sed05g1649 | Sed-Chr5:30390127 | 1.80E-274 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g1649 | K14416 | - | csv:101219939 | 916.761 |