Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1649 ATGCCTCGTAAGATGAGTGATTATGATGAAGATTACGAGGATTACAACGATTATGACGATAACGATTACGACAGAGAAGAAAAAGAAAAAATACCTGAGGCTAAGGAAGAAACAAAGGGGTGTAAGCTTTGGCGATGTCCGATTTGCGCTTACAACAATGAAGATGGTTTTTCTGCCTGTGATATATGCGGGGTTCTGCGCGACCCTCTGGTCAAGAACATCAATACCTGTGATGACAGGATAGTATTGTCTTCGGACGTCAATAAGGAAGGTGCAAACGATGCTACATTGACTTCAAAAAGTGCACATGGCTCGTCGACTGTATTGCCAAGCAGCAAATTAGGCAGCGTAGGAGATACAAAATTGAGTACCAAAAGTTCAGACAGCTCAAGCACCACAATTAGAAAAAGTGCATTGGCCATTGAAGAGCACAATACGTCTATTAATGTAACAGAAAATTTACAATCAAGTGGTAACAGGTCGTCAAGTACTTCCACGTCAAAGTCGGCAGGAAAAATTTACAGCATGGATGAGAACAGTAACCCTTCTGTCGAGCGAGAAAATCCACAAAGTCTTGCACGTAGTCTGAACAACTTGGTTCTAAATGTTAAATCTGCCTATGCAAATTATATTAGTGGGCTAGGAAAAACATCAGATGTGCAGTATAAGCATGATCAATGGATGCTACCAGATAAAGCTGTAGATACTTTGACCCAGTTGAATCTTGCTATAGTGGGTCATGTCGATTCTGGAAAATCTACTCTCTCAGGAAGACTTTTGCACCTATTAGGACGTGTCTCCAAAAAAGAAATGCACAAATATGAAAAAGAATCAAAGTCCTTGGGCAAGGGTTCATTTGCTTATGCCTGGGCACTGGATGAGAGCACAGAAGAAAGAGAGAGGGGAATAACTATGAATGTCGGTGTTGCTTATTTTGACTCTAAAAGCTATCATGTTGTCGTGCTCGACTCCCCGGGCCATAAAGATTTTGTTCCAAACTTGATATCGGGGGCAACACAAGCCGACGCTGCAGTTCTTGTTATAGATGCATCTGTTGGTGCATTTGAAGCGGGTATGGACAGTTCGAAGGGGCAAACGAGGGAACATGTGAAATTAATTAGGAGCTTTGGTGTAGATCAGATCATTGTTGTAGTTAACAAAATGGATGTGGTTCAGTATTCCAAAGATCGCTATGACTTTATTACGCAGCAAGTTGGAAAATTTTGTCGTACTTGTGGTTATAAAGATTCATCATTGATTTTGATTCCATTGAGTGCCATGGCTAATCAAAATCTGGTGGCTGCCCCCTCTGATTCTCGATTGCTGTCCTGGTATCGTGGACCAAATTTTTTGGAGGCAATTGATTCCCTTCAACCACCCAGTAGAGATTTCTCTAAGCCACTGCTTATGCCGATATGTGATGCCGGTCGATCACATTCATTAGGACAAGTGTCTGCGTGCGGAAAACTAGCAGCTGGAGCTCTCAAGTCTGGATCTAAGGTTCTAGTCATGCCATCCGGAGATAAAGGCACTGTGCGCAGTTTGGAATGCAATTCTCAGGCTTGGAAAATCGCAAGAGCAGGGGACAGCGTGACTGTTAGTCTTCAAGGAGTTGAAGCAAGTAGCGTGATGGCTGGTGGTGTCCTATGCCATCCTGATTTTCCTGTTGCTGTTGCAAAGCATTTGGAATTGAAGATTGTTACCTTGGAATTCGCATCTCCGATATTATTTGGATCTCAGTTGGAAATTCATGTACACCATGTGAAGGAGGCTGCTAGAGTTACAAAGATAGTGTCATTGCTCGATTCGAAGACGGGAAAGGTCGCGAAGAAGTCACCACGGTGCCTCAGTGCTAAACAGAGTGCAGTGATCGAGGTCGTTTTGCAAAGTCCTGTGTGCGTGGAAGTGTTCTCGACCAGTCGAGCTCTCGGGCGAGTATTTCTAAGAGCAATGGGCAGGACTATAGCTGTCGGCGTTGTGACCCAACTAATTGGAGATACTGAACAATAG 2010 43.48 MPRKMSDYDEDYEDYNDYDDNDYDREEKEKIPEAKEETKGCKLWRCPICAYNNEDGFSACDICGVLRDPLVKNINTCDDRIVLSSDVNKEGANDATLTSKSAHGSSTVLPSSKLGSVGDTKLSTKSSDSSSTTIRKSALAIEEHNTSINVTENLQSSGNRSSSTSTSKSAGKIYSMDENSNPSVERENPQSLARSLNNLVLNVKSAYANYISGLGKTSDVQYKHDQWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSKKEMHKYEKESKSLGKGSFAYAWALDESTEERERGITMNVGVAYFDSKSYHVVVLDSPGHKDFVPNLISGATQADAAVLVIDASVGAFEAGMDSSKGQTREHVKLIRSFGVDQIIVVVNKMDVVQYSKDRYDFITQQVGKFCRTCGYKDSSLILIPLSAMANQNLVAAPSDSRLLSWYRGPNFLEAIDSLQPPSRDFSKPLLMPICDAGRSHSLGQVSACGKLAAGALKSGSKVLVMPSGDKGTVRSLECNSQAWKIARAGDSVTVSLQGVEASSVMAGGVLCHPDFPVAVAKHLELKIVTLEFASPILFGSQLEIHVHHVKEAARVTKIVSLLDSKTGKVAKKSPRCLSAKQSAVIEVVLQSPVCVEVFSTSRALGRVFLRAMGRTIAVGVVTQLIGDTEQ 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30390127 30395535 - Sed0003669.1 Sed05g1649 714275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1649 669 PANTHER TRANSLATION FACTOR 238 661 IPR050100 GO:0003924(PANTHER)|GO:0006412(PANTHER)
Sed05g1649 669 Pfam GTP-eEF1A C-terminal domain-like 562 661 IPR054696 -
Sed05g1649 669 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 560 664 IPR009001 -
Sed05g1649 669 CDD EF1_alpha 241 460 - -
Sed05g1649 669 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 237 462 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed05g1649 669 Pfam Elongation factor Tu GTP binding domain 240 457 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed05g1649 669 Gene3D Translation factors 558 667 - -
Sed05g1649 669 MobiDBLite consensus disorder prediction 1 34 - -
Sed05g1649 669 FunFam Translation elongation factor EF-1 464 554 - -
Sed05g1649 669 Gene3D Translation factors 465 554 - -
Sed05g1649 669 CDD HBS1_C_III 555 663 - -
Sed05g1649 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 475 IPR027417 -
Sed05g1649 669 FunFam Translation elongation factor Tu 220 461 - -
Sed05g1649 669 MobiDBLite consensus disorder prediction 94 190 - -
Sed05g1649 669 Pfam Elongation factor Tu domain 2 488 550 IPR004161 GO:0005525(InterPro)
Sed05g1649 669 FunFam elongation factor 1-alpha isoform X4 558 667 - -
Sed05g1649 669 PRINTS GTP-binding elongation factor signature 300 308 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed05g1649 669 PRINTS GTP-binding elongation factor signature 241 254 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed05g1649 669 PRINTS GTP-binding elongation factor signature 336 347 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed05g1649 669 PRINTS GTP-binding elongation factor signature 320 330 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed05g1649 669 PRINTS GTP-binding elongation factor signature 381 390 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed05g1649 669 Gene3D - 230 461 IPR027417 -
Sed05g1649 669 ProSitePatterns Zinc finger RanBP2-type signature. 44 63 IPR001876 -
Sed05g1649 669 SUPERFAMILY Translation proteins 459 554 IPR009000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1649 Sed-Chr5:30390127 Sed09g0179 Sed-Chr9:1445372 1.60E-74 dispersed
Sed13g2080 Sed-Chr13:25561250 Sed05g1649 Sed-Chr5:30390127 1.80E-274 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1649 K14416 - csv:101219939 916.761