Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1660 ATGTCCGCTCCATCTGAAACTCCGATCAACGACCCTGCCGCCGCCGGCGACAATTCTTCCGCCACCGTCAGCAAGAAGGCGGCAAAGAAAGAAGCCGCCAAGGAGGAAAAGCTCCGACGTCGCCAGGAAGCCGACGCCGCCGCCGCCGCAGAATCTGCCATTTCGTCTCTGAACGTGGAGGACGACCCGCTCTCCGCCAACTACGGCGATCTTCCAATCTCCGATCTGCAATCCAAGGAGGCTAAGAACACCGAGAATTGGACTCCGGTCGCCGCCTTGACGGCGGAGCTTAAAGACAAGCCCGTGCTGTTGCGAGGAAGAATCCAGACGATCCGTGCGGTGGGGAAGAAGATGGCGTTTCTGGTGGTGAGAGAGAAGGGATCCACCGTGCAGTGCGTCGTGTCGGAGCAGTCGGAGCTCGTGAGTCGGCAGATGGTGAAGTATGTGGTTGGACTGAGCCGTGAGTCAATCGTTGATGTTGAAGGAGTGGTTTCTGTGCCCGGTGTCGCCATTACAGGAGCTTCGCAGCAGGTTGAGATTCAAGTGAGGAAAGTTCATTGCATCAGTAAGGCAATGCCGAATCTGCCGATAAGTATTGAGGATGCTGCTCGTAGTGAAGCTGACATTGAGAAAGCATTGAAGGCTGGTGAGCAACTGGTGCGTGTTAATCAGGATACACGATTGAACTACAGAGTCCTTGACATCCGAACTCCTGCTAACCAAGGAATTTTTCGCATTCAATGTCAAGTCGCAACTATCTTTAGACAATTTCTGTTGTCTGAGGGCTTTGTTGAAATCCATACACCAAAGTTGATTGGGGGCACCAGTGAAGGTGGTGCATCTGTTTTTAGGTTGGATTACAAAGGACAACCCGCCTGCCTGGCTCAGTCGCCTCAGCTACATAAGCAAATGGCTATCTGTGGTGACTTTGGGCGTGTATTTGAGATCGGTCCTGTTTTCCGAGCAGAGGATTCATATACACATAGGCATCTTTGTGAATTTACAGGACTTGATGTTGAAATGGAAATCAAAACTCATTATTCTGAGGTCATGAACATTGTGGACCGTCTATTTGTTTCAATGTTTGACAATATGAATGAGAACTGCAAGAAGGAGCTTGAAGCTATCGATAGACAGTATCCTTTTGAACCGTTGAAGTACTTGCGAAACACCCTACGACTTACATTTGAGGAAGGAGTTCAGATGTTGAAGGATGCCGGTATCGAAGTTGATCCTCTTGGGGATCTTAGTACAGAGGTTGAGAGGAAATTGGGACAGCTCGTCGCAGAGAAGTATGGCACGGAGTTCTACATTCTTCACCGATATCCCTTGGCTGTTCGGCCATTCTATACTATGCCTTGCCACGACAACCCAACTTATAGTAACTCATTTGATGTCTTCATTCGAGGGGAGGAAATCATTTCTGGGGCTCAGCGAGTTCACGTACCTGAATTTCTGACCGAACGGGCTCAAGCACGTGGGATCGATGTAAAAACCATAGAACCCTACATTGATTCGTTCAGATATGGCGCTCCTCCTCACGGTGGATTCGGAGTAGGTTTGGAGCGTGTTGTGATGCTTTTCTGTGGTTTGAATAACATCCGCAAAACGTCGTTGTTCCCTCGCGACCCACAAAGGATTGCTCCTTAA 1650 49.45 MSAPSETPINDPAAAGDNSSATVSKKAAKKEAAKEEKLRRRQEADAAAAAESAISSLNVEDDPLSANYGDLPISDLQSKEAKNTENWTPVAALTAELKDKPVLLRGRIQTIRAVGKKMAFLVVREKGSTVQCVVSEQSELVSRQMVKYVVGLSRESIVDVEGVVSVPGVAITGASQQVEIQVRKVHCISKAMPNLPISIEDAARSEADIEKALKAGEQLVRVNQDTRLNYRVLDIRTPANQGIFRIQCQVATIFRQFLLSEGFVEIHTPKLIGGTSEGGASVFRLDYKGQPACLAQSPQLHKQMAICGDFGRVFEIGPVFRAEDSYTHRHLCEFTGLDVEMEIKTHYSEVMNIVDRLFVSMFDNMNENCKKELEAIDRQYPFEPLKYLRNTLRLTFEEGVQMLKDAGIEVDPLGDLSTEVERKLGQLVAEKYGTEFYILHRYPLAVRPFYTMPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLTERAQARGIDVKTIEPYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30468098 30475061 - Sed0013692.1 Sed05g1660 714286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1660 549 MobiDBLite consensus disorder prediction 1 53 - -
Sed05g1660 549 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 244 541 IPR006195 -
Sed05g1660 549 Pfam OB-fold nucleic acid binding domain 102 186 IPR004365 GO:0003676(InterPro)
Sed05g1660 549 MobiDBLite consensus disorder prediction 27 46 - -
Sed05g1660 549 PANTHER ASPARTYL-TRNA SYNTHETASE 16 549 IPR004523 GO:0000166(InterPro)|GO:0003723(PANTHER)|GO:0004815(PANTHER)|GO:0004815(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0006422(InterPro)|GO:0006422(PANTHER)|GO:0017101(PANTHER)
Sed05g1660 549 PRINTS Aspartyl-tRNA synthetase signature 464 480 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Sed05g1660 549 PRINTS Aspartyl-tRNA synthetase signature 504 518 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Sed05g1660 549 PRINTS Aspartyl-tRNA synthetase signature 294 306 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Sed05g1660 549 PRINTS Aspartyl-tRNA synthetase signature 311 324 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Sed05g1660 549 FunFam Aspartyl-tRNA synthetase, cytoplasmic 64 194 - -
Sed05g1660 549 FunFam Aspartate--tRNA ligase, cytoplasmic 196 549 - -
Sed05g1660 549 Gene3D - 60 195 IPR012340 -
Sed05g1660 549 NCBIfam aspartate--tRNA(Asn) ligase 93 549 IPR004523 GO:0000166(InterPro)|GO:0004815(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006422(InterPro)
Sed05g1660 549 SUPERFAMILY Nucleic acid-binding proteins 66 193 IPR012340 -
Sed05g1660 549 SUPERFAMILY Class II aaRS and biotin synthetases 219 548 IPR045864 -
Sed05g1660 549 CDD AsxRS_core 221 545 - -
Sed05g1660 549 Coils Coil 25 45 - -
Sed05g1660 549 CDD AspRS_cyto_N 101 201 - -
Sed05g1660 549 Gene3D Bira Bifunctional Protein; Domain 2 196 549 IPR045864 -
Sed05g1660 549 MobiDBLite consensus disorder prediction 1 25 - -
Sed05g1660 549 Hamap Aspartate--tRNA(Asp) ligase [aspS]. 85 549 IPR004523 GO:0000166(InterPro)|GO:0004815(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006422(InterPro)
Sed05g1660 549 Pfam tRNA synthetases class II (D, K and N) 223 543 IPR004364 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1660 K22503 - - csv:101222217 937.947
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g2067 Sed-Chr13:25470391 Sed05g1660 Sed-Chr5:30468098 1.60E-266 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g255 Blo01g01355 . Bda01g00715 . . . . Bma01g02143 . . . . Car09g00436 . . . Cpe06g00372 . . . . . . . . . . . . . . Cone4ag1839 Cone7ag1745 . . Lsi04g02172 Csa03g04379 Chy04g00323 . . . . . . . . . Sed05g1660 . Cmo09g00498 . . . . . . Bhi09g02315 Tan01g3700 Cmetu04g3175 . Hepe01g2064 Mch11g0600 . . . . . . . . . . . Cme04g00363
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007164 1 1 2 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36