Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed05g1662 | ATGTCGACACCGGCGGCGTCTGAGGCAAGGTCGCCGTTGCCGTTACTCTTCCGGCGGCACTCCAGCGGCGAAATAAAAAACATAACGTCCGTTTCCAGCAGCCTCCTGCCGGCGTTTGGAACCGTCGTCAACGACGGATACTCCTACCTCAACAAGTTCATTATAGTTCCCTACGACAGAAGATATCGGTGGTGGCAAACTTTTCTGGTGGTGTTAGTGGTGTACTCAGCTTGGGCATCTCCTTTTGAACTTGCCTTCAAGAAAGTGGCCACTGGGTCTCTTTTGCCCGTTGATTTGGTGGTGGATGCATTTTTTGCCCTTGATATTGTGTTGACTTTCTTCTTGGCTTACTTGGATAAATCCACTTATCTCCTCGTTGATGATCATAAGAAGATAGCTGCACGTTACCTTACAAGCCTGTGGTTCCCCATGGACGTAGCCTCCACTCTTCCATTTCAGTTAATATACAGAATCATCACTGGAAAGACGCACCGGAGTGAGGCCTTCGGCTTCCTCAACTTACTTCGGTTCTGGCGACTATGGCGTGTTAGTGAACTCTTCACCAGGCTGGAGAAAGACATACGCTTTAGCTACTTCTTAACAAGACTTGTCAAACTAATTTGTGTTACACTATTGGCTGTTCATTCAGCTGGTTGTTTCTACTACTGGCTGGCAATTCATCATAAAGATTCAGAAAATACATGGATTGGAATCGAAGTCGAAGATTTTGAGAGCAGAAGCATCTGGCTTGGGTACACCTATTCGATATATTGGTCCATTGTCACACTAGCTACTGTGGGTTATGGGGACTTGCATGCAGTTAATTTAGGGGAGAAGATATTTAGCATCTGCTACATGCTGTTCAACATCGGCCTCACGGCTTATTTGATTGGAAATATGACAAATCTCATTGTTCACAGTGCTATCCGAACATTTATCATGAGGGATTCCATAAATGAAATTTTGCGTTATGGAAGCAAGAATAGACTGCCAGAAGGCTTGAAAGATCAAATGTTGGCGCATATGCAGCTAAAGTTTAAGACAGCAGAGTTGAAGCAAGAAGAGGTGTTGGAGGATTTACCTAAAGCAATCAGATCCAGTATCGCCCAGCACCTTTTCCGTCAAACAGTTGAGAATGCATACTTATTCAAGAGGCTCTCTGAAGACCTTATTGTCCAATTGGTGTCCGAGATGAAAGCAGAGTATTTTCCACCTAAAGTTGACATTATAATACAAAACGAGATACCAACAGATTTTTACATTTTGGTGTCTGGATCAGTGGATGTGATCTCTTACAAGAATGGAACTGAACAGATTTTGGCAAAGCTAGAATCTCCACAGATGGCAGGGGAAATTGCTGTGATGTTGAATATTCCACAGCCATTTACAGTGAGAACTAGAAGACTCTCCCAAGTCATCAGGATCAGTCACCATCATTTTAAGCAAATTTTGCAACCAAACAGCGAAGATGGAAAAGTCCTTTTCTCCAACTTCACTCAGCATTTGAAAGGATTAAAAAAGGAGGAGAAAAACGAAATACCCTACTTTTCAGAATTGCTGGAAGACCTAAATACAGAGCAGACTGAACAGAATGAGACACAAAACCAAAGAGTATCAAACAATCATGGAGATCAAAAAATGGAAGGAACACCAGAAGATTTGAAATCATTGCCACCTAGGGTTCCCATCAGGGTGATAATTCACGAGCACCATCCAGATGAAAGTACAAAAGACGCCAACAGTACAGGAAGACTGATACTTCTGCCTGAGTCAATTGAAGAACTTTTTGGATTGGCAGAGAAAAGATTTGGCAAGAGAGGGAGCTCAATTATCATGGCTGATGGCTCTAAAGTGGAAGACTTGAATGTTTTAAGAGAGGGTGATAATTTGTTCTTTGTTTGA | 1902 | 42.64 | MSTPAASEARSPLPLLFRRHSSGEIKNITSVSSSLLPAFGTVVNDGYSYLNKFIIVPYDRRYRWWQTFLVVLVVYSAWASPFELAFKKVATGSLLPVDLVVDAFFALDIVLTFFLAYLDKSTYLLVDDHKKIAARYLTSLWFPMDVASTLPFQLIYRIITGKTHRSEAFGFLNLLRFWRLWRVSELFTRLEKDIRFSYFLTRLVKLICVTLLAVHSAGCFYYWLAIHHKDSENTWIGIEVEDFESRSIWLGYTYSIYWSIVTLATVGYGDLHAVNLGEKIFSICYMLFNIGLTAYLIGNMTNLIVHSAIRTFIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLKFKTAELKQEEVLEDLPKAIRSSIAQHLFRQTVENAYLFKRLSEDLIVQLVSEMKAEYFPPKVDIIIQNEIPTDFYILVSGSVDVISYKNGTEQILAKLESPQMAGEIAVMLNIPQPFTVRTRRLSQVIRISHHHFKQILQPNSEDGKVLFSNFTQHLKGLKKEEKNEIPYFSELLEDLNTEQTEQNETQNQRVSNNHGDQKMEGTPEDLKSLPPRVPIRVIIHEHHPDESTKDANSTGRLILLPESIEELFGLAEKRFGKRGSSIIMADGSKVEDLNVLREGDNLFFV | 633 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 30491060 | 30498935 | + | Sed0025949.1 | Sed05g1662 | 714288 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed05g1662 | 633 | PANTHER | POTASSIUM CHANNEL AKT1 | 26 | 530 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Sed05g1662 | 633 | Pfam | Ion transport protein | 62 | 306 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed05g1662 | 633 | SUPERFAMILY | Voltage-gated potassium channels | 57 | 305 | - | - | |
| Sed05g1662 | 633 | PRINTS | EAG/ELK/ERG potassium channel family signature | 109 | 118 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed05g1662 | 633 | PRINTS | EAG/ELK/ERG potassium channel family signature | 252 | 269 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed05g1662 | 633 | PRINTS | EAG/ELK/ERG potassium channel family signature | 278 | 289 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed05g1662 | 633 | PRINTS | EAG/ELK/ERG potassium channel family signature | 296 | 305 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed05g1662 | 633 | PRINTS | EAG/ELK/ERG potassium channel family signature | 98 | 108 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed05g1662 | 633 | MobiDBLite | consensus disorder prediction | 526 | 545 | - | - | |
| Sed05g1662 | 633 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 382 | 501 | IPR000595 | - | |
| Sed05g1662 | 633 | Gene3D | - | 64 | 306 | - | - | |
| Sed05g1662 | 633 | Pfam | KHA, dimerisation domain of potassium ion channel | 564 | 632 | IPR021789 | - | |
| Sed05g1662 | 633 | CDD | CAP_ED | 382 | 494 | IPR000595 | - | |
| Sed05g1662 | 633 | SMART | cnmp_10 | 382 | 499 | IPR000595 | - | |
| Sed05g1662 | 633 | ProSiteProfiles | KHA domain profile. | 564 | 633 | IPR021789 | - | |
| Sed05g1662 | 633 | Pfam | Cyclic nucleotide-binding domain | 402 | 485 | IPR000595 | - | |
| Sed05g1662 | 633 | FunFam | Potassium channel KAT2 | 370 | 506 | - | - | |
| Sed05g1662 | 633 | Gene3D | Jelly Rolls | 349 | 515 | IPR014710 | - | |
| Sed05g1662 | 633 | MobiDBLite | consensus disorder prediction | 526 | 555 | - | - | |
| Sed05g1662 | 633 | FunFam | Potassium channel KAT3 | 64 | 306 | - | - | |
| Sed05g1662 | 633 | SUPERFAMILY | cAMP-binding domain-like | 311 | 502 | IPR018490 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed05g1662 | Sed-Chr5:30491060 | Sed08g0702 | Sed-Chr8:5101328 | 4.50E-135 | dispersed | |
| Sed05g1662 | Sed-Chr5:30491060 | Sed12g2387 | Sed-Chr12:33723683 | 4.00E-139 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed05g1662 | K21867 | - | csv:101215177 | 1119.76 |