Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1662 ATGTCGACACCGGCGGCGTCTGAGGCAAGGTCGCCGTTGCCGTTACTCTTCCGGCGGCACTCCAGCGGCGAAATAAAAAACATAACGTCCGTTTCCAGCAGCCTCCTGCCGGCGTTTGGAACCGTCGTCAACGACGGATACTCCTACCTCAACAAGTTCATTATAGTTCCCTACGACAGAAGATATCGGTGGTGGCAAACTTTTCTGGTGGTGTTAGTGGTGTACTCAGCTTGGGCATCTCCTTTTGAACTTGCCTTCAAGAAAGTGGCCACTGGGTCTCTTTTGCCCGTTGATTTGGTGGTGGATGCATTTTTTGCCCTTGATATTGTGTTGACTTTCTTCTTGGCTTACTTGGATAAATCCACTTATCTCCTCGTTGATGATCATAAGAAGATAGCTGCACGTTACCTTACAAGCCTGTGGTTCCCCATGGACGTAGCCTCCACTCTTCCATTTCAGTTAATATACAGAATCATCACTGGAAAGACGCACCGGAGTGAGGCCTTCGGCTTCCTCAACTTACTTCGGTTCTGGCGACTATGGCGTGTTAGTGAACTCTTCACCAGGCTGGAGAAAGACATACGCTTTAGCTACTTCTTAACAAGACTTGTCAAACTAATTTGTGTTACACTATTGGCTGTTCATTCAGCTGGTTGTTTCTACTACTGGCTGGCAATTCATCATAAAGATTCAGAAAATACATGGATTGGAATCGAAGTCGAAGATTTTGAGAGCAGAAGCATCTGGCTTGGGTACACCTATTCGATATATTGGTCCATTGTCACACTAGCTACTGTGGGTTATGGGGACTTGCATGCAGTTAATTTAGGGGAGAAGATATTTAGCATCTGCTACATGCTGTTCAACATCGGCCTCACGGCTTATTTGATTGGAAATATGACAAATCTCATTGTTCACAGTGCTATCCGAACATTTATCATGAGGGATTCCATAAATGAAATTTTGCGTTATGGAAGCAAGAATAGACTGCCAGAAGGCTTGAAAGATCAAATGTTGGCGCATATGCAGCTAAAGTTTAAGACAGCAGAGTTGAAGCAAGAAGAGGTGTTGGAGGATTTACCTAAAGCAATCAGATCCAGTATCGCCCAGCACCTTTTCCGTCAAACAGTTGAGAATGCATACTTATTCAAGAGGCTCTCTGAAGACCTTATTGTCCAATTGGTGTCCGAGATGAAAGCAGAGTATTTTCCACCTAAAGTTGACATTATAATACAAAACGAGATACCAACAGATTTTTACATTTTGGTGTCTGGATCAGTGGATGTGATCTCTTACAAGAATGGAACTGAACAGATTTTGGCAAAGCTAGAATCTCCACAGATGGCAGGGGAAATTGCTGTGATGTTGAATATTCCACAGCCATTTACAGTGAGAACTAGAAGACTCTCCCAAGTCATCAGGATCAGTCACCATCATTTTAAGCAAATTTTGCAACCAAACAGCGAAGATGGAAAAGTCCTTTTCTCCAACTTCACTCAGCATTTGAAAGGATTAAAAAAGGAGGAGAAAAACGAAATACCCTACTTTTCAGAATTGCTGGAAGACCTAAATACAGAGCAGACTGAACAGAATGAGACACAAAACCAAAGAGTATCAAACAATCATGGAGATCAAAAAATGGAAGGAACACCAGAAGATTTGAAATCATTGCCACCTAGGGTTCCCATCAGGGTGATAATTCACGAGCACCATCCAGATGAAAGTACAAAAGACGCCAACAGTACAGGAAGACTGATACTTCTGCCTGAGTCAATTGAAGAACTTTTTGGATTGGCAGAGAAAAGATTTGGCAAGAGAGGGAGCTCAATTATCATGGCTGATGGCTCTAAAGTGGAAGACTTGAATGTTTTAAGAGAGGGTGATAATTTGTTCTTTGTTTGA 1902 42.64 MSTPAASEARSPLPLLFRRHSSGEIKNITSVSSSLLPAFGTVVNDGYSYLNKFIIVPYDRRYRWWQTFLVVLVVYSAWASPFELAFKKVATGSLLPVDLVVDAFFALDIVLTFFLAYLDKSTYLLVDDHKKIAARYLTSLWFPMDVASTLPFQLIYRIITGKTHRSEAFGFLNLLRFWRLWRVSELFTRLEKDIRFSYFLTRLVKLICVTLLAVHSAGCFYYWLAIHHKDSENTWIGIEVEDFESRSIWLGYTYSIYWSIVTLATVGYGDLHAVNLGEKIFSICYMLFNIGLTAYLIGNMTNLIVHSAIRTFIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLKFKTAELKQEEVLEDLPKAIRSSIAQHLFRQTVENAYLFKRLSEDLIVQLVSEMKAEYFPPKVDIIIQNEIPTDFYILVSGSVDVISYKNGTEQILAKLESPQMAGEIAVMLNIPQPFTVRTRRLSQVIRISHHHFKQILQPNSEDGKVLFSNFTQHLKGLKKEEKNEIPYFSELLEDLNTEQTEQNETQNQRVSNNHGDQKMEGTPEDLKSLPPRVPIRVIIHEHHPDESTKDANSTGRLILLPESIEELFGLAEKRFGKRGSSIIMADGSKVEDLNVLREGDNLFFV 633
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 30491060 30498935 + Sed0025949.1 Sed05g1662 714288
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1662 633 PANTHER POTASSIUM CHANNEL AKT1 26 530 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Sed05g1662 633 Pfam Ion transport protein 62 306 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g1662 633 SUPERFAMILY Voltage-gated potassium channels 57 305 - -
Sed05g1662 633 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed05g1662 633 PRINTS EAG/ELK/ERG potassium channel family signature 252 269 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed05g1662 633 PRINTS EAG/ELK/ERG potassium channel family signature 278 289 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed05g1662 633 PRINTS EAG/ELK/ERG potassium channel family signature 296 305 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed05g1662 633 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed05g1662 633 MobiDBLite consensus disorder prediction 526 545 - -
Sed05g1662 633 ProSiteProfiles cAMP/cGMP binding motif profile. 382 501 IPR000595 -
Sed05g1662 633 Gene3D - 64 306 - -
Sed05g1662 633 Pfam KHA, dimerisation domain of potassium ion channel 564 632 IPR021789 -
Sed05g1662 633 CDD CAP_ED 382 494 IPR000595 -
Sed05g1662 633 SMART cnmp_10 382 499 IPR000595 -
Sed05g1662 633 ProSiteProfiles KHA domain profile. 564 633 IPR021789 -
Sed05g1662 633 Pfam Cyclic nucleotide-binding domain 402 485 IPR000595 -
Sed05g1662 633 FunFam Potassium channel KAT2 370 506 - -
Sed05g1662 633 Gene3D Jelly Rolls 349 515 IPR014710 -
Sed05g1662 633 MobiDBLite consensus disorder prediction 526 555 - -
Sed05g1662 633 FunFam Potassium channel KAT3 64 306 - -
Sed05g1662 633 SUPERFAMILY cAMP-binding domain-like 311 502 IPR018490 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1662 Sed-Chr5:30491060 Sed08g0702 Sed-Chr8:5101328 4.50E-135 dispersed
Sed05g1662 Sed-Chr5:30491060 Sed12g2387 Sed-Chr12:33723683 4.00E-139 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1662 K21867 - csv:101215177 1119.76