Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1679 ATGAGTAGGGAAAACGTTACTTTTCAAGTTGGAGAGCGCTCGGGGAGAATCACAAGGGCACGGGCAAAAGAGCTAAGCGAATCGGGAGGAATTCTATGCTCCTCAAAATCTTCTGGAGTTCAGAAGCCTATTCTACGAGCTAACTCGAAAAGAATGGCATCTGATGATATTAGTGTTTGTTCAATTGCTTCCAATGGCTTTCCTAATAAAAGAAGAGCAGTGCTGAAGGATGTGACTAACATTTCCGCCAGAGGTTATGATAAAAATTGCAGCAACACTTCTAATATTCAGGGCGACAAACCAACTAGAAGAGTTTCTGCAAAAGCCAAGGCAAATGTGCCTTTAAATGTTCATGTAGAAATTCTAGGAGCAGAAGAAGATGCAAACTCAAAACTGGCTGAGGATTTATCTAAAATAAGGGTGGTCGAATCACGAGAGGTCTCTTTACTAGAAACTTTAGACGAAAAAGAGACAACAATGCAAACTATGTGTCACACCAACAGAGGATGTGGGCTTTCAGATATGGTTCTCTCCGTATCATCAAAAAATTCTATCCCTCAGCCCAATGAGAAAAATATGACACCAGAACAGTCAGGTGCATCAAATGGTAGAGGCATTATAGACATTGATTCAAACTCCAAATGTCTTCAATCTTGCAGCATATATGCTCCAGACATATATGACAGGATACGTGTGACAGAGCTTGATCAAAGAGCCACAACTGACCATATGGAGCAGTTGCAGCAAGATGTCACTGCAAACATGCGAGGAATACTGGTTGATTGGCTTGTAGAGGTTTCTGAAGAATATAAGCTAGTTCCAGATACACTCTATCTCACTGTGAATGTTATTGATCGGTTTCTCTCTCAACATTGTATTGAGAAAAAGCGTCTACAACTTCTCGGTGTTGCAAGCATGCTAATTGCATCAAAATACGAGGAGATCTGTGCACCGCGTGTGGAAGATTTCTGCTTCATTACAGATAATACTTACACAAAAAGAGAGGTAGTAGACATGGAAAGTGAAGTTTTGAACTTACTGCACTTTCGGCTATCTGTTCCCACTACAAAGACATTTCTAAGGAGATTCATACAATCAGCTCATGCTTCCTACAAGGTTCCTTGCATTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGACTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTTTGATAGCCGCATCCGCCGTATTTCTTGCTAGATGGACACTAGACCAATCCGGTCATCCGTGGAATCCAACTCTAGAGCACTATACAAGTTACAACACTTGTGAGCTAAAAACTGCTGTGCTTGCCCTCCAAGACTTGCAACTTAACACCAGTGCTTCCTCGCTAAATTCCATACGTGAGAAGTATAAACAACCTAAGTTCAAATGCGTGGCGAAATTAACATCCGCTCGATCAGTTCTTTCACTATTCTGA 1455 41.1 MSRENVTFQVGERSGRITRARAKELSESGGILCSSKSSGVQKPILRANSKRMASDDISVCSIASNGFPNKRRAVLKDVTNISARGYDKNCSNTSNIQGDKPTRRVSAKAKANVPLNVHVEILGAEEDANSKLAEDLSKIRVVESREVSLLETLDEKETTMQTMCHTNRGCGLSDMVLSVSSKNSIPQPNEKNMTPEQSGASNGRGIIDIDSNSKCLQSCSIYAPDIYDRIRVTELDQRATTDHMEQLQQDVTANMRGILVDWLVEVSEEYKLVPDTLYLTVNVIDRFLSQHCIEKKRLQLLGVASMLIASKYEEICAPRVEDFCFITDNTYTKREVVDMESEVLNLLHFRLSVPTTKTFLRRFIQSAHASYKVPCIELEFLANYLAELTLVEYSFLKFLPSLIAASAVFLARWTLDQSGHPWNPTLEHYTSYNTCELKTAVLALQDLQLNTSASSLNSIREKYKQPKFKCVAKLTSARSVLSLF 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30582433 30589514 - Sed0017078.1 Sed05g1679 714305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1679 484 Pfam Cyclin, C-terminal domain 354 476 IPR004367 -
Sed05g1679 484 ProSitePatterns Cyclins signature. 256 287 IPR048258 -
Sed05g1679 484 Gene3D - 239 352 - -
Sed05g1679 484 PIRSF Cyclin_A_B_D_E 34 483 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Sed05g1679 484 CDD CYCLIN_AtCycA-like_rpt2 354 468 - -
Sed05g1679 484 SUPERFAMILY Cyclin-like 217 351 IPR036915 -
Sed05g1679 484 SMART Cyclin_C_2 354 477 IPR004367 -
Sed05g1679 484 FunFam Mitotic cyclin 6 239 339 - -
Sed05g1679 484 Pfam Cyclin, N-terminal domain 225 352 IPR006671 -
Sed05g1679 484 PANTHER CYCLINS 203 465 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed05g1679 484 Gene3D - 225 473 - -
Sed05g1679 484 SMART cyclin_7 358 446 IPR013763 -
Sed05g1679 484 SMART cyclin_7 261 345 IPR013763 -
Sed05g1679 484 FunFam Cyclin A1 341 473 - -
Sed05g1679 484 SUPERFAMILY Cyclin-like 353 476 IPR036915 -
Sed05g1679 484 MobiDBLite consensus disorder prediction 183 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1679 Sed-Chr5:30582433 Sed07g1518 Sed-Chr7:11915751 3.30E-109 dispersed
Sed10g1978 Sed-Chr10:36424674 Sed05g1679 Sed-Chr5:30582433 2.80E-65 transposed
Sed01g1333 Sed-Chr1:9923179 Sed05g1679 Sed-Chr5:30582433 3.70E-107 wgd
Sed13g2048 Sed-Chr13:25269435 Sed05g1679 Sed-Chr5:30582433 1.30E-219 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1679 K06627 - csv:101204275 803.512