Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed05g1681 | ATGATATTAGGGATTTCAGGAACTACTCATAGCAGCATTGAGAAATCGAATAAGATGGGAATTTTAGGGAGATCACTGTGCGGGCAAGATCAGCACCGAGATATCGATCAGTTAGCGAGAGACGAAGGCAGCCAGTACAGTCTCACCGGCGGAATCCTGCCGCCGCTCGGCGTCAACGGCAGAAACAATCGCAGAGTCAAGCTTCGTCCTCATATTATCTCGCCATTTTCTTACAACTACAGAGTTTGGGAAACATTTCTGATAGTTCTAGTTTTGTACACGGCGTGGACTTGTCCATTTGAGTTTGGGTTCATCCCGACGGGCGGCGGATTTCTGGCTATAATCGATAATGTGGTGAACGGGATTTTCGCGGTTGATATAGTTTTGACATTCTTCGTGGCGTATTTGGACAAAACTTCTTATCTGCTGGTTGACGATCCCAACCTGATTGCTTTGCGATACGCCAAATCCTGGTTGGTTCTTGACGTCGTCTCCGTTATTCCAGCCGAATTGGCTCGGAGCATTCTTCCCCATCCTTATGGCTACTTCAATATGCTTCGCCTATGGCGTCTCCGCCGAGTCAGCTCCATGTTCGCCAAGTTGGAAAAGGACAGGAACTTCAGCTATTTCTGGGTTCGGTGTTCAAAGCTTATATTTGTGTGTATGTTTTCGGCTCATTTTGCTGGGTGCTGCTTCTACTTAATAGCTTCAAACTATGAAGACCCGAAAAAGACATGGTTGGCCGCAGCAATGGAAAGCTTTCCTGAAGAGACTTTGTGGCAGCGTTATGTGACTGCCATTTACTGGTCAATTGTCACACTCACGACCACGGGCTATGGTGATTTGCATCCTGTAAATGATAAAGAAATGGTATTTCTCATCTTTTACCTCTTCTTTGTACTGGGATTGCAAGCCTACCTCATTGGAAATATGACCAACTTGGTCGTCCACGGCACCAGTCGAACTAGGAAATTTAGGGACACTATACAAGCTGCATCAAATTTCGCCCAAAGAAATCAACTACCTGCTCGGCTGCAAGAACAGATGGTTGCTCATCTGTGTTTGAAATTCAGGACTGATTCTGAAGGATTACAACAACAAGAAACAGTCGAATCTCTTCCAAAAGCCATTAGATCTGGCATCGCTCACCATCTCTTCTATTCACTTGTTGACAGCGCTTATATATTCAACGGGGTCTCAACCGACTTGATTTTTCAACTGGTGACAGAAATGAAGGCTGAGTACTTCCCTCCCAAAGAAGATGTTATCTTGCAGAATGAAGCACCAACAGATTTCTATATAGTCGTCACCGGCACTGCGGATCTTCTCGTACAAAGAAATGGAATAGAAGAGATCGTCGGTGAAGCAAGGACGGGAGACGTCATTGGCGAGATAGGAGTGCTTTGTTATAAACCTCAATTGTTCACAGTTCGAACCAGCCGTTTGAGTCAATTGTTACGTTTGAATCGCACGTCATTTTTCAACTTAGTACAAGCAAGCGTTGGGGATGGAACAATAATAATGAACAATCTCCTAAAGCACCTCAAGGGGATAAAAGATCCCATGATGGAGGAAATTCTGCAAGAAACAGAACAGACGTTGAGTCGGGCTGGAATAGAAACGCCTCTTGATTTATACTACGCAGCAGCCAGTGGCGATGACTTAATGTTGCATCAGCTGCTAAAGCGGGGTTCGCCGACAGATGAAGTAGATCCCAGTACCAGGAAGACGGCACTTCATGTAGCAGCGGCAAAAGGAAACGAACACTGCGTCGTTTTACTCATAGAGTATGGGGCAGACCCGAACCGAAGAGACTTGGAAGGAAACGTTCCCCTATGGCAAGCAATACAAGGGAAGCATGAGTCTATAGTTAAGATTCTAATGGACAATGGTGCTGATATTTCTTCCGGTGACGTTGCCAATTTTGCATGTACGGCTGCAGAGCAAAACAGCATAGATATGCTCAAATCCCTCGTCGAATGCGGAGGGGATGTAACGCTGTCAAAAAGCAACGGGACTACGGCACTCCACATGGCAGTATGTGAAGAAAACAATGAAATGGTTAAGTTCCTTTTAGAGCAAGGGGCCGACATCGATAAGGCAGATCTTCGAGGATGGACTCCTCGAGCATTGGCAGATCATCAAGGCCATGATGAGATAAAAGAACTATTCTCCATTAAGCAAGCTGTTAATAAATCATCTGTTGTCAATATTCCACAAAATCTCGAATCAAATTACCTAGGGAAGTTCCAGAGTGAATCAAACATGCCAAGGTTTTCCCAAGACTCCTGCATGACTCCTGTTCGAGAATCAAATTGTTCGGAACGACCACCTAGAAGGAGAAGAAGCAATAATTATCGAAACACACTAGTAGGGTTCATGACATCGCTCAATACCGGTGAAAGGGACAGACCACAATCTGCGTCGCTCGGTTTTGGAAATGGACGAAGCCCGAGAGTGGCCTACCAGGCAAGACTTTTTCTCAGTTGCCCTGAAAAGGGAAATGTAGCTAAAAAGCTTGTGCATTTACCCAAATCCATCCCAGAACTACTTGAAATCGGTACCAAAAAATTTGGGATTTCTATTACAAAGATTTTAACTCAAGAAGGAGCTGAAGTTGAGGATATAGACCTTATCAGAGATGGTGATCACCTCCTACTTGTTGGCGATGCTAGTTCCAACGTCCCCAGCATCCGCTAA | 2700 | 45.0 | MILGISGTTHSSIEKSNKMGILGRSLCGQDQHRDIDQLARDEGSQYSLTGGILPPLGVNGRNNRRVKLRPHIISPFSYNYRVWETFLIVLVLYTAWTCPFEFGFIPTGGGFLAIIDNVVNGIFAVDIVLTFFVAYLDKTSYLLVDDPNLIALRYAKSWLVLDVVSVIPAELARSILPHPYGYFNMLRLWRLRRVSSMFAKLEKDRNFSYFWVRCSKLIFVCMFSAHFAGCCFYLIASNYEDPKKTWLAAAMESFPEETLWQRYVTAIYWSIVTLTTTGYGDLHPVNDKEMVFLIFYLFFVLGLQAYLIGNMTNLVVHGTSRTRKFRDTIQAASNFAQRNQLPARLQEQMVAHLCLKFRTDSEGLQQQETVESLPKAIRSGIAHHLFYSLVDSAYIFNGVSTDLIFQLVTEMKAEYFPPKEDVILQNEAPTDFYIVVTGTADLLVQRNGIEEIVGEARTGDVIGEIGVLCYKPQLFTVRTSRLSQLLRLNRTSFFNLVQASVGDGTIIMNNLLKHLKGIKDPMMEEILQETEQTLSRAGIETPLDLYYAAASGDDLMLHQLLKRGSPTDEVDPSTRKTALHVAAAKGNEHCVVLLIEYGADPNRRDLEGNVPLWQAIQGKHESIVKILMDNGADISSGDVANFACTAAEQNSIDMLKSLVECGGDVTLSKSNGTTALHMAVCEENNEMVKFLLEQGADIDKADLRGWTPRALADHQGHDEIKELFSIKQAVNKSSVVNIPQNLESNYLGKFQSESNMPRFSQDSCMTPVRESNCSERPPRRRRSNNYRNTLVGFMTSLNTGERDRPQSASLGFGNGRSPRVAYQARLFLSCPEKGNVAKKLVHLPKSIPELLEIGTKKFGISITKILTQEGAEVEDIDLIRDGDHLLLVGDASSNVPSIR | 899 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 30609943 | 30618284 | - | Sed0017562.1 | Sed05g1681 | 714307 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed05g1681 | 899 | Gene3D | - | 80 | 316 | - | - | |
| Sed05g1681 | 899 | Pfam | KHA, dimerisation domain of potassium ion channel | 825 | 887 | IPR021789 | - | |
| Sed05g1681 | 899 | FunFam | Potassium channel KAT3 | 82 | 317 | - | - | |
| Sed05g1681 | 899 | Pfam | Ankyrin repeats (3 copies) | 645 | 723 | IPR002110 | GO:0005515(InterPro) | |
| Sed05g1681 | 899 | Pfam | Ankyrin repeats (3 copies) | 545 | 636 | IPR002110 | GO:0005515(InterPro) | |
| Sed05g1681 | 899 | ProSiteProfiles | Ankyrin repeat profile. | 607 | 639 | IPR002110 | GO:0005515(InterPro) | |
| Sed05g1681 | 899 | ProSiteProfiles | Ankyrin repeat region circular profile. | 671 | 702 | - | - | |
| Sed05g1681 | 899 | MobiDBLite | consensus disorder prediction | 758 | 784 | - | - | |
| Sed05g1681 | 899 | CDD | CAP_ED | 395 | 498 | IPR000595 | - | |
| Sed05g1681 | 899 | Gene3D | - | 542 | 726 | IPR036770 | - | |
| Sed05g1681 | 899 | ProSiteProfiles | Ankyrin repeat profile. | 574 | 606 | IPR002110 | GO:0005515(InterPro) | |
| Sed05g1681 | 899 | SUPERFAMILY | Voltage-gated potassium channels | 75 | 316 | - | - | |
| Sed05g1681 | 899 | ProSiteProfiles | Ankyrin repeat profile. | 671 | 703 | IPR002110 | GO:0005515(InterPro) | |
| Sed05g1681 | 899 | Pfam | Ion transport protein | 80 | 322 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed05g1681 | 899 | ProSiteProfiles | Ankyrin repeat region circular profile. | 574 | 605 | - | - | |
| Sed05g1681 | 899 | ProSiteProfiles | KHA domain profile. | 825 | 899 | IPR021789 | - | |
| Sed05g1681 | 899 | SMART | ANK_2a | 671 | 700 | IPR002110 | GO:0005515(InterPro) | |
| Sed05g1681 | 899 | SMART | ANK_2a | 638 | 667 | IPR002110 | GO:0005515(InterPro) | |
| Sed05g1681 | 899 | SMART | ANK_2a | 607 | 636 | IPR002110 | GO:0005515(InterPro) | |
| Sed05g1681 | 899 | SMART | ANK_2a | 540 | 569 | IPR002110 | GO:0005515(InterPro) | |
| Sed05g1681 | 899 | SMART | ANK_2a | 574 | 603 | IPR002110 | GO:0005515(InterPro) | |
| Sed05g1681 | 899 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 395 | 497 | IPR000595 | - | |
| Sed05g1681 | 899 | SMART | cnmp_10 | 395 | 512 | IPR000595 | - | |
| Sed05g1681 | 899 | Gene3D | Jelly Rolls | 359 | 517 | IPR014710 | - | |
| Sed05g1681 | 899 | SUPERFAMILY | Ankyrin repeat | 545 | 724 | IPR036770 | - | |
| Sed05g1681 | 899 | PRINTS | EAG/ELK/ERG potassium channel family signature | 93 | 100 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed05g1681 | 899 | PRINTS | EAG/ELK/ERG potassium channel family signature | 263 | 280 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed05g1681 | 899 | PRINTS | EAG/ELK/ERG potassium channel family signature | 116 | 126 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed05g1681 | 899 | PRINTS | EAG/ELK/ERG potassium channel family signature | 127 | 136 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed05g1681 | 899 | PRINTS | EAG/ELK/ERG potassium channel family signature | 307 | 316 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed05g1681 | 899 | Pfam | Cyclic nucleotide-binding domain | 414 | 499 | IPR000595 | - | |
| Sed05g1681 | 899 | FunFam | Potassium channel KAT2 | 383 | 519 | - | - | |
| Sed05g1681 | 899 | SUPERFAMILY | cAMP-binding domain-like | 320 | 515 | IPR018490 | - | |
| Sed05g1681 | 899 | ProSiteProfiles | Ankyrin repeat region circular profile. | 607 | 638 | - | - | |
| Sed05g1681 | 899 | PANTHER | POTASSIUM CHANNEL AKT1 | 39 | 886 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed05g1681 | Sed-Chr5:30609943 | Sed12g2387 | Sed-Chr12:33723683 | 2.90E-284 | dispersed | |
| Sed05g1681 | Sed-Chr5:30609943 | Sed08g0702 | Sed-Chr8:5101328 | 3.40E-285 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed05g1681 | K21867 | - | csv:101217334 | 1347.8 |