Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1681 ATGATATTAGGGATTTCAGGAACTACTCATAGCAGCATTGAGAAATCGAATAAGATGGGAATTTTAGGGAGATCACTGTGCGGGCAAGATCAGCACCGAGATATCGATCAGTTAGCGAGAGACGAAGGCAGCCAGTACAGTCTCACCGGCGGAATCCTGCCGCCGCTCGGCGTCAACGGCAGAAACAATCGCAGAGTCAAGCTTCGTCCTCATATTATCTCGCCATTTTCTTACAACTACAGAGTTTGGGAAACATTTCTGATAGTTCTAGTTTTGTACACGGCGTGGACTTGTCCATTTGAGTTTGGGTTCATCCCGACGGGCGGCGGATTTCTGGCTATAATCGATAATGTGGTGAACGGGATTTTCGCGGTTGATATAGTTTTGACATTCTTCGTGGCGTATTTGGACAAAACTTCTTATCTGCTGGTTGACGATCCCAACCTGATTGCTTTGCGATACGCCAAATCCTGGTTGGTTCTTGACGTCGTCTCCGTTATTCCAGCCGAATTGGCTCGGAGCATTCTTCCCCATCCTTATGGCTACTTCAATATGCTTCGCCTATGGCGTCTCCGCCGAGTCAGCTCCATGTTCGCCAAGTTGGAAAAGGACAGGAACTTCAGCTATTTCTGGGTTCGGTGTTCAAAGCTTATATTTGTGTGTATGTTTTCGGCTCATTTTGCTGGGTGCTGCTTCTACTTAATAGCTTCAAACTATGAAGACCCGAAAAAGACATGGTTGGCCGCAGCAATGGAAAGCTTTCCTGAAGAGACTTTGTGGCAGCGTTATGTGACTGCCATTTACTGGTCAATTGTCACACTCACGACCACGGGCTATGGTGATTTGCATCCTGTAAATGATAAAGAAATGGTATTTCTCATCTTTTACCTCTTCTTTGTACTGGGATTGCAAGCCTACCTCATTGGAAATATGACCAACTTGGTCGTCCACGGCACCAGTCGAACTAGGAAATTTAGGGACACTATACAAGCTGCATCAAATTTCGCCCAAAGAAATCAACTACCTGCTCGGCTGCAAGAACAGATGGTTGCTCATCTGTGTTTGAAATTCAGGACTGATTCTGAAGGATTACAACAACAAGAAACAGTCGAATCTCTTCCAAAAGCCATTAGATCTGGCATCGCTCACCATCTCTTCTATTCACTTGTTGACAGCGCTTATATATTCAACGGGGTCTCAACCGACTTGATTTTTCAACTGGTGACAGAAATGAAGGCTGAGTACTTCCCTCCCAAAGAAGATGTTATCTTGCAGAATGAAGCACCAACAGATTTCTATATAGTCGTCACCGGCACTGCGGATCTTCTCGTACAAAGAAATGGAATAGAAGAGATCGTCGGTGAAGCAAGGACGGGAGACGTCATTGGCGAGATAGGAGTGCTTTGTTATAAACCTCAATTGTTCACAGTTCGAACCAGCCGTTTGAGTCAATTGTTACGTTTGAATCGCACGTCATTTTTCAACTTAGTACAAGCAAGCGTTGGGGATGGAACAATAATAATGAACAATCTCCTAAAGCACCTCAAGGGGATAAAAGATCCCATGATGGAGGAAATTCTGCAAGAAACAGAACAGACGTTGAGTCGGGCTGGAATAGAAACGCCTCTTGATTTATACTACGCAGCAGCCAGTGGCGATGACTTAATGTTGCATCAGCTGCTAAAGCGGGGTTCGCCGACAGATGAAGTAGATCCCAGTACCAGGAAGACGGCACTTCATGTAGCAGCGGCAAAAGGAAACGAACACTGCGTCGTTTTACTCATAGAGTATGGGGCAGACCCGAACCGAAGAGACTTGGAAGGAAACGTTCCCCTATGGCAAGCAATACAAGGGAAGCATGAGTCTATAGTTAAGATTCTAATGGACAATGGTGCTGATATTTCTTCCGGTGACGTTGCCAATTTTGCATGTACGGCTGCAGAGCAAAACAGCATAGATATGCTCAAATCCCTCGTCGAATGCGGAGGGGATGTAACGCTGTCAAAAAGCAACGGGACTACGGCACTCCACATGGCAGTATGTGAAGAAAACAATGAAATGGTTAAGTTCCTTTTAGAGCAAGGGGCCGACATCGATAAGGCAGATCTTCGAGGATGGACTCCTCGAGCATTGGCAGATCATCAAGGCCATGATGAGATAAAAGAACTATTCTCCATTAAGCAAGCTGTTAATAAATCATCTGTTGTCAATATTCCACAAAATCTCGAATCAAATTACCTAGGGAAGTTCCAGAGTGAATCAAACATGCCAAGGTTTTCCCAAGACTCCTGCATGACTCCTGTTCGAGAATCAAATTGTTCGGAACGACCACCTAGAAGGAGAAGAAGCAATAATTATCGAAACACACTAGTAGGGTTCATGACATCGCTCAATACCGGTGAAAGGGACAGACCACAATCTGCGTCGCTCGGTTTTGGAAATGGACGAAGCCCGAGAGTGGCCTACCAGGCAAGACTTTTTCTCAGTTGCCCTGAAAAGGGAAATGTAGCTAAAAAGCTTGTGCATTTACCCAAATCCATCCCAGAACTACTTGAAATCGGTACCAAAAAATTTGGGATTTCTATTACAAAGATTTTAACTCAAGAAGGAGCTGAAGTTGAGGATATAGACCTTATCAGAGATGGTGATCACCTCCTACTTGTTGGCGATGCTAGTTCCAACGTCCCCAGCATCCGCTAA 2700 45.0 MILGISGTTHSSIEKSNKMGILGRSLCGQDQHRDIDQLARDEGSQYSLTGGILPPLGVNGRNNRRVKLRPHIISPFSYNYRVWETFLIVLVLYTAWTCPFEFGFIPTGGGFLAIIDNVVNGIFAVDIVLTFFVAYLDKTSYLLVDDPNLIALRYAKSWLVLDVVSVIPAELARSILPHPYGYFNMLRLWRLRRVSSMFAKLEKDRNFSYFWVRCSKLIFVCMFSAHFAGCCFYLIASNYEDPKKTWLAAAMESFPEETLWQRYVTAIYWSIVTLTTTGYGDLHPVNDKEMVFLIFYLFFVLGLQAYLIGNMTNLVVHGTSRTRKFRDTIQAASNFAQRNQLPARLQEQMVAHLCLKFRTDSEGLQQQETVESLPKAIRSGIAHHLFYSLVDSAYIFNGVSTDLIFQLVTEMKAEYFPPKEDVILQNEAPTDFYIVVTGTADLLVQRNGIEEIVGEARTGDVIGEIGVLCYKPQLFTVRTSRLSQLLRLNRTSFFNLVQASVGDGTIIMNNLLKHLKGIKDPMMEEILQETEQTLSRAGIETPLDLYYAAASGDDLMLHQLLKRGSPTDEVDPSTRKTALHVAAAKGNEHCVVLLIEYGADPNRRDLEGNVPLWQAIQGKHESIVKILMDNGADISSGDVANFACTAAEQNSIDMLKSLVECGGDVTLSKSNGTTALHMAVCEENNEMVKFLLEQGADIDKADLRGWTPRALADHQGHDEIKELFSIKQAVNKSSVVNIPQNLESNYLGKFQSESNMPRFSQDSCMTPVRESNCSERPPRRRRSNNYRNTLVGFMTSLNTGERDRPQSASLGFGNGRSPRVAYQARLFLSCPEKGNVAKKLVHLPKSIPELLEIGTKKFGISITKILTQEGAEVEDIDLIRDGDHLLLVGDASSNVPSIR 899
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 30609943 30618284 - Sed0017562.1 Sed05g1681 714307
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1681 899 Gene3D - 80 316 - -
Sed05g1681 899 Pfam KHA, dimerisation domain of potassium ion channel 825 887 IPR021789 -
Sed05g1681 899 FunFam Potassium channel KAT3 82 317 - -
Sed05g1681 899 Pfam Ankyrin repeats (3 copies) 645 723 IPR002110 GO:0005515(InterPro)
Sed05g1681 899 Pfam Ankyrin repeats (3 copies) 545 636 IPR002110 GO:0005515(InterPro)
Sed05g1681 899 ProSiteProfiles Ankyrin repeat profile. 607 639 IPR002110 GO:0005515(InterPro)
Sed05g1681 899 ProSiteProfiles Ankyrin repeat region circular profile. 671 702 - -
Sed05g1681 899 MobiDBLite consensus disorder prediction 758 784 - -
Sed05g1681 899 CDD CAP_ED 395 498 IPR000595 -
Sed05g1681 899 Gene3D - 542 726 IPR036770 -
Sed05g1681 899 ProSiteProfiles Ankyrin repeat profile. 574 606 IPR002110 GO:0005515(InterPro)
Sed05g1681 899 SUPERFAMILY Voltage-gated potassium channels 75 316 - -
Sed05g1681 899 ProSiteProfiles Ankyrin repeat profile. 671 703 IPR002110 GO:0005515(InterPro)
Sed05g1681 899 Pfam Ion transport protein 80 322 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g1681 899 ProSiteProfiles Ankyrin repeat region circular profile. 574 605 - -
Sed05g1681 899 ProSiteProfiles KHA domain profile. 825 899 IPR021789 -
Sed05g1681 899 SMART ANK_2a 671 700 IPR002110 GO:0005515(InterPro)
Sed05g1681 899 SMART ANK_2a 638 667 IPR002110 GO:0005515(InterPro)
Sed05g1681 899 SMART ANK_2a 607 636 IPR002110 GO:0005515(InterPro)
Sed05g1681 899 SMART ANK_2a 540 569 IPR002110 GO:0005515(InterPro)
Sed05g1681 899 SMART ANK_2a 574 603 IPR002110 GO:0005515(InterPro)
Sed05g1681 899 ProSiteProfiles cAMP/cGMP binding motif profile. 395 497 IPR000595 -
Sed05g1681 899 SMART cnmp_10 395 512 IPR000595 -
Sed05g1681 899 Gene3D Jelly Rolls 359 517 IPR014710 -
Sed05g1681 899 SUPERFAMILY Ankyrin repeat 545 724 IPR036770 -
Sed05g1681 899 PRINTS EAG/ELK/ERG potassium channel family signature 93 100 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed05g1681 899 PRINTS EAG/ELK/ERG potassium channel family signature 263 280 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed05g1681 899 PRINTS EAG/ELK/ERG potassium channel family signature 116 126 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed05g1681 899 PRINTS EAG/ELK/ERG potassium channel family signature 127 136 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed05g1681 899 PRINTS EAG/ELK/ERG potassium channel family signature 307 316 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed05g1681 899 Pfam Cyclic nucleotide-binding domain 414 499 IPR000595 -
Sed05g1681 899 FunFam Potassium channel KAT2 383 519 - -
Sed05g1681 899 SUPERFAMILY cAMP-binding domain-like 320 515 IPR018490 -
Sed05g1681 899 ProSiteProfiles Ankyrin repeat region circular profile. 607 638 - -
Sed05g1681 899 PANTHER POTASSIUM CHANNEL AKT1 39 886 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1681 Sed-Chr5:30609943 Sed12g2387 Sed-Chr12:33723683 2.90E-284 dispersed
Sed05g1681 Sed-Chr5:30609943 Sed08g0702 Sed-Chr8:5101328 3.40E-285 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1681 K21867 - csv:101217334 1347.8