Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1699 ATGGTTTATTCGAGGAAGTTCAGAGGAGTGAGGCAGCGGCAGTGGGGTTCGTGGGTGTCAGAAATTCGCCACCCATTGCTGAAGAGAAGGGTTTGGCTAGGAACATTCGATACAGCCGAGGATGCGGCACGAGCGTATGATCAAGCAGCCATCTTGATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCATCCAAAGACCAATCTGAAGAAGCCAGCCACAGCCATAGAGCTTCTCCATTAGCCCCAAAAGCACTTTCAGAGCTACTCAGCACAAAGCTTAGAAAGTGCTGCAAGAACCCATCTCCCTCCTTGACATGCCTGCGGCTCGACAGCGACAACTCCCACATCGGCGTCTGGCAGAAGCGTGCAGGCTCTCGAGCAGCCTCCAGTTGGGTCATGAGGATTGAGCTAGAGAAGAAGGAGACGCCCTCGCCCTTGCCATCACCCGAATCGACGAGCCAGGAAGCTGATAGACATCAGAATGGAATTGATGAAGAAGACAGAATTGCAATTCAAATGATTGAAGAGTTGCTCAATTGGAACTGCCCCCTTCCTTCATCTTCAAGCTAA 573 51.31 MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSEEASHSHRASPLAPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNSHIGVWQKRAGSRAASSWVMRIELEKKETPSPLPSPESTSQEADRHQNGIDEEDRIAIQMIEELLNWNCPLPSSSS 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30831780 30833572 - Sed0008743.1 Sed05g1699 714325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1699 190 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Sed05g1699 190 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1699 190 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1699 190 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1699 190 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1699 190 MobiDBLite consensus disorder prediction 139 168 - -
Sed05g1699 190 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 138 IPR050913 -
Sed05g1699 190 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1699 190 MobiDBLite consensus disorder prediction 59 82 - -
Sed05g1699 190 CDD AP2 6 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1699 190 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
Sed05g1699 190 Pfam AP2 domain 6 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1699 Sed-Chr5:30831780 Sed10g1443 Sed-Chr10:30652516 8.50E-53 dispersed
Sed13g2026 Sed-Chr13:25166544 Sed05g1699 Sed-Chr5:30831780 1.90E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38543 PF00847 AP2 3.80E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1699 - - - 0.0