Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1711 ATGGAAGAGAAATCTGTTACAAAGGAGTCTCAGAACCGGTACTCCAAAGCTGCAAAAGACTGGGGATGGCGTGAATTTGTCACACTTACTAGCCTCTTTGATCAGGATTCCGGTTTTCTAGTTCAGGATACTGTAATATTCTCAGCAGAAGTCCTTATATTAAAGGAGACATCTGTGATGCAGAATTTTATTGATCAAGATGTGGAGCCAACTGGTTCCAGCTCTGGGATGGATAAGGTAACAAAAATAAGTTCGTTTACATGGAAGGTGGAGAACTTTTTGTCCTTCAAGGAAATAATGGAGACCCGTAAAATCTTTAGTAAATTCTTTCAAGCTGGCGGATGTGAGCTCCGTATTGGCGTCTATGAGTCCTTTGACACCATTTGCATCTATCTGGAGAGTGATCAGTCTGTTGGCAGTGATCCAGATAAAAACTTTTGGGTTAGATACAAAATTGCCGTCGTGAATCAAAAATATCCAGCAAAAACTGTATCGAAGGAGTCTTCTATCTGTACAAAGACGTGGAATAATTCTGTTTTGCAATTCATGAAGGTGTCAGATATGCTAGAGGCTGAAGCGGGGTTTCTTGTACGTGATTCAGTTGTTTTTGTATGTGAAATATTGGATTGTTGCCCTTGGTTTGAGTTTTCAGATCTTGAGGTTTTGGCTTCAGAAGATGATCAGGATGCTTTGACTACTGATCCGGATGAGCTCATTGACTCAGACGATAGTGAAGGAATGAGTGGCGATGAAGAAGACATTTTCAGAAACCTTCTATCTACAGCTGGCTTTCATCTAACATATGGAGATAATCCTTCACAACCACAAGTCACATTGCGAGAAAAGCTTTTAATGGATGCTGGTGCAATTGCAGGCTTTCTTACTGGACTTCGTGTTTATCTTGATGATCCTGCTAAAGTTAAGCGTTTGCTTCTTCCTACTAAGATCTCCACTGGCAATGATGGGAAGAAGATCCCAAAGACCGAGGAGACGTCCCCAAGTTTAATGAATTTGCTTATGGGAGTCAAAGTTTTACAGCAGGCAATTATTGATTTACTATTGGATATAATGGTTGAATGTTGTCAGCCTTCAGAAGGAGGCTCTGGAGACCATCTGGAAGCAAATTCAAAGACTTCTCTTCCTAGCCGTGGAGCTACTACTACACCACTAGAAGGTGAAAATGAAAATGGAGCAATAGAGGTTGCAGATTGTCCTCCATTTCAGAGACTGGACTCCATTGATGAAAGTAGCAGTGCTAGTGCACCTGCTGTACAAAGCTCTGACGTGATAAAAACTGATAGGCTGGGTAAGCCTCGACCTGAAGGGCTAGTACATCCACCTGAAACATCTGCTGGGGTTTCAGAGAATGTCTTCCTTCGTACAAAGACCAAGTGGCCTGAGCAATCTGAGGAGCTTTTAGGTTTGATTGTAAATTCATTGAGAGCCCTTGATGGAGCTGTCCCTCGAGGATGTCCTGAGCCAAGAAGACGGCCTCAGTCCGCACAAAAAATTGCTCTTGTGCTGGATAAAGCCCCCAAGCATCTACAGTCTGAATTGGTTGCTCTAGTACCCAAACTGGTTGAGCATTCAGAACATCCATTGGCTTTTGGTGTGCTTCTAGAACGGCTTCAACAGTCTGGTGCTGAGCCAGCACTCCGGATACCTGTTTTTGGTGCTCTTAGTCAATTGGATTGTGGCACTGAAGTTTGGGAACAGGTTCTACTTAAATCTATCGAGTTTTTAGCAGATTCAAATGACGAGCCTCTTGCTGCAACAATAGATTTCGTTTTCAAAGCTGGAGCTCAGTGCCAACTTCTTTCTGAAGCAGTGAGTTCCGTTCGCCTTCGGCTGAAGAATTTGGGCATGGAGGTTTCCCCATGTGTTCTTGATTTATTAAGTAAAACGGTAAATAGCTGGGGTGATGTTTCTGATATTATACTCAGAGACATTGATTGTGATGACGAGGCTGATGAATTCCACTCAAAAATATCACGTGAGCTTTTCTTATTTGGGGAACCTGGCCCTGCTTCTGAAAGTTCTCATCCGTTGGATGAGAAGGATTTACATGCTGGTCGTCATTTTTCTGATATTTATATCTTGATTGAGATGTTATCCATACCTTGTCTTGCCGTTGAAGCATCACAGACATTTGAGAGAGCTGTAGCTCGTGGTGCCATCACAGCTAAATCTGTAGCTGTGGTGTTGGAAAAACGTCTTGCTCAAAAAGCAAATAGCAACACTAGATTCGTAGCTGAAAGCTTTCGGCAGGGAGATTCTGTAATAGATGGAGAAACTAGTGAAAAGCTGAGAGTCCAACGGGATGATTTTACTTCTATGATTGGTCTTGCTGAAACTTTAGCACTCTCTAGAGACCCTTGTGTTAGAGGATTTGTGAAAAATCTGTATCCGTTATTGTTTAAGTGGTATGCAAGCGAATCATATCGAGCTAGGATGCTAAAAAGATTAGTTGATCGTTTCACCAGCAATACAGATACTAACACAAGTACTAGCTGTGAAGTCGATATGGATTTGGAAATTCTGGTTATGTTAATTGGTGATGAACAAGAAGTAATTAGACCTGTGCTAAAGATGATGCGGGATGTCGCTGGACTAGCGAATGTTGATCGGGCTGCTCTCTGGCACCAGTTATGTGCTACTGAAGATGAAATCATCCGTATCCGTGAAGAAAGCAAAGTAGAAACTTCAAATATGATAAAAGAAAAAACTGCTCTGTCTCAAAAATTGAGTGAATCTGAAGCCATGAACAATCGCCTTAAGGTTGATATGAAGGCTGAAATGGAGCGATTTTCTCGGGAGAAAAAGGAACTTTCTGAGCAAATACATGATCTTGAAAGTCAGCTTGAGTGGCTGCGCTCTGAGCGAGATGACGAGGTTGTGAAGTTAACATCAGAGAAGAAAGTTCTCCATGATCGTCTTCATGATGCTGAGGCTCAAATTGCTCAGTTGAAATCCCGAAAACGTGATGAGATGAAGAAGGTGGTTAAGGAAAAAAATGCTCTTGCTGAGAGGTTGAAGAGTGCTGAAGTTGCTAGGAAAAGATTTGATGAACAACTGAAACGATATGCAAATGAGAATTTGACAAAGGAAGAAATTCGGCAGTCACTGGAAGATGAAGTTCGACGGCTTACGCAAACAGTTGGACAGACTGAAGGAGAAAAGAGGGAAAAGGAGGAGCAGATTGCTCGATGTGAAGCATATATTGATGGGATGGAACCAAAATTTCAGGCCTACCAGCAATATATCCATTCACTTGAGACATCACTACAAGAGGAAATGTCAAGACATGCCCCTCTATATGGTGCTGGTTTGGAAGCCCTGTCAATGAAGGAGCTAGATACAATATCCCGAATTCACGAAGAAGGATTAAGACAGATCCATAGTCTTCAGCAGCAGCGCAAAGGGAGTCCAGTTGGCAGTTCTCTCGTAAGCCCTCATTCCCTCTCTCACAGCCATGGGTTGTATACTGCTGCACCGTCGTCCCCTAGCGCTGTCGGGTTGCCCTCTTCACTCATGCCGAATGGCTCAGGAATCCACAGCAATGGGCATGTGAATGGTGGTGCAGTCGGACCATGGTTCAACCATGCTTGA 3609 42.89 MEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSVMQNFIDQDVEPTGSSSGMDKVTKISSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDPDKNFWVRYKIAVVNQKYPAKTVSKESSICTKTWNNSVLQFMKVSDMLEAEAGFLVRDSVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSDDSEGMSGDEEDIFRNLLSTAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKISTGNDGKKIPKTEETSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEGGSGDHLEANSKTSLPSRGATTTPLEGENENGAIEVADCPPFQRLDSIDESSSASAPAVQSSDVIKTDRLGKPRPEGLVHPPETSAGVSENVFLRTKTKWPEQSEELLGLIVNSLRALDGAVPRGCPEPRRRPQSAQKIALVLDKAPKHLQSELVALVPKLVEHSEHPLAFGVLLERLQQSGAEPALRIPVFGALSQLDCGTEVWEQVLLKSIEFLADSNDEPLAATIDFVFKAGAQCQLLSEAVSSVRLRLKNLGMEVSPCVLDLLSKTVNSWGDVSDIILRDIDCDDEADEFHSKISRELFLFGEPGPASESSHPLDEKDLHAGRHFSDIYILIEMLSIPCLAVEASQTFERAVARGAITAKSVAVVLEKRLAQKANSNTRFVAESFRQGDSVIDGETSEKLRVQRDDFTSMIGLAETLALSRDPCVRGFVKNLYPLLFKWYASESYRARMLKRLVDRFTSNTDTNTSTSCEVDMDLEILVMLIGDEQEVIRPVLKMMRDVAGLANVDRAALWHQLCATEDEIIRIREESKVETSNMIKEKTALSQKLSESEAMNNRLKVDMKAEMERFSREKKELSEQIHDLESQLEWLRSERDDEVVKLTSEKKVLHDRLHDAEAQIAQLKSRKRDEMKKVVKEKNALAERLKSAEVARKRFDEQLKRYANENLTKEEIRQSLEDEVRRLTQTVGQTEGEKREKEEQIARCEAYIDGMEPKFQAYQQYIHSLETSLQEEMSRHAPLYGAGLEALSMKELDTISRIHEEGLRQIHSLQQQRKGSPVGSSLVSPHSLSHSHGLYTAAPSSPSAVGLPSSLMPNGSGIHSNGHVNGGAVGPWFNHA 1202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30944185 30954606 + Sed0024031.2 Sed05g1711 714337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1711 1202 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1 72 IPR008974 GO:0005515(InterPro)
Sed05g1711 1202 MobiDBLite consensus disorder prediction 410 449 - -
Sed05g1711 1202 CDD MATH 85 207 IPR002083 GO:0005515(InterPro)
Sed05g1711 1202 ProSiteProfiles MATH/TRAF domain profile. 83 207 IPR002083 GO:0005515(InterPro)
Sed05g1711 1202 MobiDBLite consensus disorder prediction 365 392 - -
Sed05g1711 1202 Coils Coil 965 1066 - -
Sed05g1711 1202 SUPERFAMILY TRAF domain-like 3 57 - -
Sed05g1711 1202 MobiDBLite consensus disorder prediction 411 427 - -
Sed05g1711 1202 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 73 209 IPR008974 GO:0005515(InterPro)
Sed05g1711 1202 SUPERFAMILY TRAF domain-like 85 208 - -
Sed05g1711 1202 CDD MATH 2 51 IPR002083 GO:0005515(InterPro)
Sed05g1711 1202 ProSiteProfiles MATH/TRAF domain profile. 1 51 IPR002083 GO:0005515(InterPro)
Sed05g1711 1202 Coils Coil 926 960 - -
Sed05g1711 1202 Pfam MATH domain 85 207 IPR002083 GO:0005515(InterPro)
Sed05g1711 1202 PANTHER TRAF-LIKE FAMILY PROTEIN 1 1201 - -
Sed05g1711 1202 MobiDBLite consensus disorder prediction 1134 1170 - -
Sed05g1711 1202 MobiDBLite consensus disorder prediction 369 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1711 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1711 Sed-Chr5:30944185 Sed13g2013 Sed-Chr13:25024546 0.00E+00 dispersed
Sed05g1710 Sed-Chr5:30944185 Sed05g1711 Sed-Chr5:30944185 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g501 . . . Bda03g00075 . . Bma04g00072 . . . Cma01g01513 . Car09g00391 . . . Cpe06g00327 . . . . . . . Cla05g01725 Cam05g1838 Cec05g1852 Cco05g1909 Clacu05g1825 Cmu05g1709 Cre05g1840 . . Cone17ag1011 . Lsi04g02117 Csa03g04321 Chy04g00379 . . . . . . Bpe04g00061 . . Sed05g1711 Cmo01g01566 Cmo09g00453 Cma09g00443 . . . . Cpe02g00443 Bhi09g02224 Tan01g3626 Cmetu04g2170 . Hepe01g2009 Mch11g0545 . . . . . . . . . . . Cme04g00422
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007058 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 2 37