Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1719 ATGGCGTACCCCAACCACCTCTCTCAGGACCTTCCTCTCAACTTCTCCGACCCCCTCGCCGCCGCCCACTCCTCCCCGGACCCCAAATCCCACCACCACCACCTTCAGGCGGCGCCCAACTGGCTCAACAACGCCCTCCTTCGCAACCAAAACCCCCACTCTCACTACTCCCCCGCCCCCAATACTAATTTCCTCCACCTTCACACCACCCAACCCGATTCCCCCCTCTCTCACTCCTCTAACCAGTGCCTTACTCGTCCGATTCTTCACCGTAACCCCAGCGATGTCATCGACCATCCTATGATCAGTGCCGCCGCCGCAGATTCCGCCGACGGGAGTAGCGCCGACGGAATATTGAACAAGAGCGAGGGCGTCGTCATGGAAACTGGCGGCGGAGAGGGGGTTTTGAATTGGCAACAGGCTCGATTCAAGGCGGAGATTCTTGCCCATCCTCTTTACGACCAGCTTCTTTCGGCTCACGTTGCTTGTCTCCGTATCGCCACGCCCGTCGATCAGTTGCCGAGGATCGACGCTCAGCTCGCGCAGTCGGAGAATGTCGTCGCCAAGTACTCCGCCTTGGGCCACACCGCTCCGCCCATGGCCGTCGGCGATGACAAAGAGCTTGATCAGTTCATGACGCATTATGTTCTTCTGCTTTGTTCATTCAAAGATCAACTCCAACAACATGTTCGGGTCCATGCCATGGAAGCAGTAATGGCATGCTGGGACATTGAGCAGTCCCTACAAAGCTTAACAGGAGTATCACCAGGTGAAGGTACCGGAGCGACAATGTCGGACGACGAAGACGACCAGGTCGACAGTGATGCAAATTTATTTGATGGAAGTTTAGACGGCCCAGACAACATGGGATTTGGCCCTCTTATTCCCACAGAGAGTGAGAGGTCCTTGATGGAAAGGGTCAGGCAAGAGCTGAAGCATGAACTAAAAGCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAGAGAAGAGCTGGAAAACTCCCTGGTGACACCACTTCTGTCCTAAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTGCAACTGAAACAGATAAATAATTGGTTCATTAATCAGAGAAAGCGAAACTGGCACAGCAATCCTTCAGGCTCTTCAAACTTAAAAAGCAAACGCAAAAGTAATGCAGGTGAAAACAGCAGCGACCGTTTCAAATGA 1257 52.35 MAYPNHLSQDLPLNFSDPLAAAHSSPDPKSHHHHLQAAPNWLNNALLRNQNPHSHYSPAPNTNFLHLHTTQPDSPLSHSSNQCLTRPILHRNPSDVIDHPMISAAAADSADGSSADGILNKSEGVVMETGGGEGVLNWQQARFKAEILAHPLYDQLLSAHVACLRIATPVDQLPRIDAQLAQSENVVAKYSALGHTAPPMAVGDDKELDQFMTHYVLLLCSFKDQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSLDGPDNMGFGPLIPTESERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSGSSNLKSKRKSNAGENSSDRFK 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30987398 30992764 - Sed0024191.2 Sed05g1719 714345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1719 418 CDD homeodomain 333 394 IPR001356 GO:0003677(InterPro)
Sed05g1719 418 SMART HOX_1 332 397 IPR001356 GO:0003677(InterPro)
Sed05g1719 418 Pfam KNOX2 domain 202 252 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed05g1719 418 Pfam KNOX1 domain 143 184 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed05g1719 418 MobiDBLite consensus disorder prediction 252 271 - -
Sed05g1719 418 MobiDBLite consensus disorder prediction 387 407 - -
Sed05g1719 418 FunFam homeobox protein knotted-1-like 3 isoform X1 331 392 - -
Sed05g1719 418 SMART KNOX1_2 141 185 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed05g1719 418 Gene3D - 331 392 - -
Sed05g1719 418 SMART ELK_2 310 331 IPR005539 GO:0003677(InterPro)
Sed05g1719 418 SUPERFAMILY Homeodomain-like 332 396 IPR009057 -
Sed05g1719 418 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 92 396 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed05g1719 418 MobiDBLite consensus disorder prediction 387 418 - -
Sed05g1719 418 Pfam Homeobox KN domain 350 389 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed05g1719 418 SMART KNOX2_2 198 253 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed05g1719 418 MobiDBLite consensus disorder prediction 48 81 - -
Sed05g1719 418 ProSiteProfiles 'Homeobox' domain profile. 330 393 IPR001356 GO:0003677(InterPro)
Sed05g1719 418 ProSiteProfiles ELK domain profile. 310 330 IPR005539 GO:0003677(InterPro)
Sed05g1719 418 Pfam ELK domain 310 331 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1719 Sed-Chr5:30987398 Sed05g1721 Sed-Chr5:30987398 4.60E-237 dispersed
Sed05g1718 Sed-Chr5:30987398 Sed05g1719 Sed-Chr5:30987398 4.80E-242 tandem
Sed05g1719 Sed-Chr5:30987398 Sed05g1720 Sed-Chr5:30987398 4.60E-237 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38545 PF03791 KNOX2 5.00E-21 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1719 - - - 0.0