Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g1719 | ATGGCGTACCCCAACCACCTCTCTCAGGACCTTCCTCTCAACTTCTCCGACCCCCTCGCCGCCGCCCACTCCTCCCCGGACCCCAAATCCCACCACCACCACCTTCAGGCGGCGCCCAACTGGCTCAACAACGCCCTCCTTCGCAACCAAAACCCCCACTCTCACTACTCCCCCGCCCCCAATACTAATTTCCTCCACCTTCACACCACCCAACCCGATTCCCCCCTCTCTCACTCCTCTAACCAGTGCCTTACTCGTCCGATTCTTCACCGTAACCCCAGCGATGTCATCGACCATCCTATGATCAGTGCCGCCGCCGCAGATTCCGCCGACGGGAGTAGCGCCGACGGAATATTGAACAAGAGCGAGGGCGTCGTCATGGAAACTGGCGGCGGAGAGGGGGTTTTGAATTGGCAACAGGCTCGATTCAAGGCGGAGATTCTTGCCCATCCTCTTTACGACCAGCTTCTTTCGGCTCACGTTGCTTGTCTCCGTATCGCCACGCCCGTCGATCAGTTGCCGAGGATCGACGCTCAGCTCGCGCAGTCGGAGAATGTCGTCGCCAAGTACTCCGCCTTGGGCCACACCGCTCCGCCCATGGCCGTCGGCGATGACAAAGAGCTTGATCAGTTCATGACGCATTATGTTCTTCTGCTTTGTTCATTCAAAGATCAACTCCAACAACATGTTCGGGTCCATGCCATGGAAGCAGTAATGGCATGCTGGGACATTGAGCAGTCCCTACAAAGCTTAACAGGAGTATCACCAGGTGAAGGTACCGGAGCGACAATGTCGGACGACGAAGACGACCAGGTCGACAGTGATGCAAATTTATTTGATGGAAGTTTAGACGGCCCAGACAACATGGGATTTGGCCCTCTTATTCCCACAGAGAGTGAGAGGTCCTTGATGGAAAGGGTCAGGCAAGAGCTGAAGCATGAACTAAAAGCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAGAGAAGAGCTGGAAAACTCCCTGGTGACACCACTTCTGTCCTAAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTGCAACTGAAACAGATAAATAATTGGTTCATTAATCAGAGAAAGCGAAACTGGCACAGCAATCCTTCAGGCTCTTCAAACTTAAAAAGCAAACGCAAAAGTAATGCAGGTGAAAACAGCAGCGACCGTTTCAAATGA | 1257 | 52.35 | MAYPNHLSQDLPLNFSDPLAAAHSSPDPKSHHHHLQAAPNWLNNALLRNQNPHSHYSPAPNTNFLHLHTTQPDSPLSHSSNQCLTRPILHRNPSDVIDHPMISAAAADSADGSSADGILNKSEGVVMETGGGEGVLNWQQARFKAEILAHPLYDQLLSAHVACLRIATPVDQLPRIDAQLAQSENVVAKYSALGHTAPPMAVGDDKELDQFMTHYVLLLCSFKDQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSLDGPDNMGFGPLIPTESERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSGSSNLKSKRKSNAGENSSDRFK | 418 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 30987398 | 30992764 | - | Sed0024191.2 | Sed05g1719 | 714345 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g1719 | 418 | CDD | homeodomain | 333 | 394 | IPR001356 | GO:0003677(InterPro) | |
Sed05g1719 | 418 | SMART | HOX_1 | 332 | 397 | IPR001356 | GO:0003677(InterPro) | |
Sed05g1719 | 418 | Pfam | KNOX2 domain | 202 | 252 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed05g1719 | 418 | Pfam | KNOX1 domain | 143 | 184 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed05g1719 | 418 | MobiDBLite | consensus disorder prediction | 252 | 271 | - | - | |
Sed05g1719 | 418 | MobiDBLite | consensus disorder prediction | 387 | 407 | - | - | |
Sed05g1719 | 418 | FunFam | homeobox protein knotted-1-like 3 isoform X1 | 331 | 392 | - | - | |
Sed05g1719 | 418 | SMART | KNOX1_2 | 141 | 185 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed05g1719 | 418 | Gene3D | - | 331 | 392 | - | - | |
Sed05g1719 | 418 | SMART | ELK_2 | 310 | 331 | IPR005539 | GO:0003677(InterPro) | |
Sed05g1719 | 418 | SUPERFAMILY | Homeodomain-like | 332 | 396 | IPR009057 | - | |
Sed05g1719 | 418 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 92 | 396 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed05g1719 | 418 | MobiDBLite | consensus disorder prediction | 387 | 418 | - | - | |
Sed05g1719 | 418 | Pfam | Homeobox KN domain | 350 | 389 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed05g1719 | 418 | SMART | KNOX2_2 | 198 | 253 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed05g1719 | 418 | MobiDBLite | consensus disorder prediction | 48 | 81 | - | - | |
Sed05g1719 | 418 | ProSiteProfiles | 'Homeobox' domain profile. | 330 | 393 | IPR001356 | GO:0003677(InterPro) | |
Sed05g1719 | 418 | ProSiteProfiles | ELK domain profile. | 310 | 330 | IPR005539 | GO:0003677(InterPro) | |
Sed05g1719 | 418 | Pfam | ELK domain | 310 | 331 | IPR005539 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1719 | Sed-Chr5:30987398 | Sed05g1721 | Sed-Chr5:30987398 | 4.60E-237 | dispersed | |
Sed05g1718 | Sed-Chr5:30987398 | Sed05g1719 | Sed-Chr5:30987398 | 4.80E-242 | tandem | |
Sed05g1719 | Sed-Chr5:30987398 | Sed05g1720 | Sed-Chr5:30987398 | 4.60E-237 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38545 | PF03791 | KNOX2 | 5.00E-21 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g1719 | - | - | - | 0.0 |