Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1725 ATGCCGTCTCACAAGACTTTCCGAATCAAGAAGAAGCTGGCGAAGAAGATGAGGCAGAACAGGCCGATTCCGCACTGGATCCGTCTCAGAACCGACAATACGATCAGATACAACGCGAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGA 156 53.85 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31046231 31046934 - Sed0018228.1 Sed05g1725 714351

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1725 51 ProSitePatterns Ribosomal protein L39e signature. 30 46 IPR020083 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Sed05g1725 51 FunFam 60S ribosomal protein-like L39 1 51 - -
Sed05g1725 51 PANTHER RIBOSOMAL PROTEIN L39E 1 51 - GO:0022625(PANTHER)
Sed05g1725 51 Gene3D Ribosomal protein L39e 1 51 IPR023626 -
Sed05g1725 51 Pfam Ribosomal L39 protein 9 49 IPR000077 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Sed05g1725 51 SUPERFAMILY Ribosomal protein L39e 3 50 IPR023626 -
Sed05g1725 51 Hamap Large ribosomal subunit protein eL39 [rpl39e]. 1 51 IPR000077 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1725 K02924 - - csv:101212943 112.849
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0429 Sed-Chr4:3142270 Sed05g1725 Sed-Chr5:31046231 1.50E-24 transposed
Sed13g1986 Sed-Chr13:24739357 Sed05g1725 Sed-Chr5:31046231 2.60E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g533 . . . . . . . . . . . . . . Sed05g1725 . . Bhi04g00035 Tan02g2750 Cmetu01g0581 . Hepe10g0228 . Lcy13g1815 . . . . . . . . . . . . . . . Blo17g00008 . . . . . . Bma02g00013 . . . . . . . . . Bhi09g02973 . . . . Mch11g0521 . . . . . . . . . . . Cme07g00102
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002071 1 4 2 3 2 0 5 1 0 0 2 0 3 3 2 3 0 3 3 0 2 1 1 1 1 2 4 3 2 3 57