Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1730 ATGACGGTTGAGCCCAGAATCGACGACCCAGTTGACCGATTCCCCGCTGGGATGCGTGTTCTTGCTGTCGACGATGATCCCACTTGCCTTTTGATCTTGGAGACTTTGCTTCGTCGATGCCAGTATCATGTCACTACAACAAATCAGGCTGTTGTGGCACTCAAGTTGTTGAGAGAAAACAAGAACAGGTTCGACGTGGTCATCAGCGATGTGCACATGCCTGATATGGATGGATTTAAGCTGCTAGAGCTTGTTGGACTGGAGATGGACCTTCCTGTTATTATGCTCTCTGCAAATGGAGATCCCAAACTTGTGATGAAAGGAATTTCTCATGGAGCATGTGATTACTTGTTGAAACCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAGCATGTTATCAGGAGAAAAAGATTTGATCCGAAGGACCAAGTGAATTCTGGCAATCAGGACAAGCCTGATTCTGAGAATGGTGAAGAAGTAGCAGATTCAAATGGGATATTTAATAAAAAGAGAAAGGATCAGGACTACAATGAAGACGACGACCAGGACTACAATGGGCAAGAAAATGACGACTCGTCAACCCAGAAGAAGCCTCGTGTTGTTTGGTCTGTCGAGCTGCATCGGAAGTTTGTAAATGCTGTTAACCAGTTGGGCATTGACAAAGCAGTGCCTAAAAAGATTTTGGACTTGATGAACGTCGAAAAGCTCACAAGAGAAAATGTAGCCAGCCATCTCCAGAAATACAGGCTTTATCTCAAGAGAATCAGCTGTGTAGCAAACCAGCAAGCTAACATGGTTACTGCATTGAGCAGCGCAGATCCTTCCTATTTGAGAATTGGTTCTCTAAGCGGAATCGGAAATTTCCATTCCTTGAATGGACCTCCACAGTTTGCTAATACTGCTTATAGATCTATCCCAACAACCGGGATGCTCGGTCGGTTGAATACTCCTGCTTGCATGGGTATGCATGGCCTTTCTACCCCGGGAACAGTTCCACTGGGTAACTTGAACAATTCAACCAATGATCAGTCCACATTTCAGTCAATCATGCTTTCGGGAAACCGCAGTGGGAACATTTTTCGGAGAATGCCTGAGCCATCAGAACTTGATCAACTAAGACACGTTAAGCACGAGACCCATGTGGGCAGTCTCTCTTCTGCTTTTAATGAGAGAACAGTATTTTCTGCTTCTACTGGCCTCCCAACTGCAAACATGTCTGCCTGTACTTTGAGCAATCCTCTCTTAGAATTAACCAGTGATCCTTTCATTTCAGAACTCCAGCATCATGAAATGCACGGCGGTAGAAAATTTGGGCCTCAATCTTCCATGTCTGTGGTATCTTCAAACTCGGAAAGTTCACGTCCTTCACTAGATAATGTTAGATGCACCGGTGATAATTGGTCGAAAACTGCTCATTCATCTAGGATCCACTTGAATACTATTCCATCTAACAACCTTCCTAATATTGCTACTTCTTACCATAGTCAATTGAGGGACAATGCTACCAGTGCATTGCATATTGGAAGTTGTCTTTCTGACATTTCTTCTATAAATTCGACATGTACTCAATCTCGTGTTTCGAGAACCAATTCGCAATGTCAAACAGCCACAGGTAGCAACAGATATGATCAAATAATGACGAAGGTTCCTGTTCAAGATTGGAATGATCATAAAGAGGATGCCTATTACCACACAACTGTGGCCTGTAGCTCATCAAATTCTTTGATACCAGTGAATGGTGCCGCCGAGATGTTACCGAAGCATTTGGAGAATCAGAACACAATCTTCTCAGGAAGCAAGGGTTATAATGTGACTGGTCAAGCAAATGTTCTTGATCATGCAATGGTGGAACATGATCAATTCAAGAAATCAGCTATGGATACATCACTCATGTTGAAACATGGGTACCTGTATGATCATCAGCAAAAGATGCAAACTAGATTTTCTTCAACCAACTGTGGCTCCTTGGAAGACATAGCATGTGCAATGATGAAAGAGGAACAAGAAGATGGAAATTTATTGGAAGGTGACTTTGGATGTGATAATTATCCCATTGGAACGTGCATGTGA 2073 43.03 MTVEPRIDDPVDRFPAGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAVVALKLLRENKNRFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKRFDPKDQVNSGNQDKPDSENGEEVADSNGIFNKKRKDQDYNEDDDQDYNGQENDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLSGIGNFHSLNGPPQFANTAYRSIPTTGMLGRLNTPACMGMHGLSTPGTVPLGNLNNSTNDQSTFQSIMLSGNRSGNIFRRMPEPSELDQLRHVKHETHVGSLSSAFNERTVFSASTGLPTANMSACTLSNPLLELTSDPFISELQHHEMHGGRKFGPQSSMSVVSSNSESSRPSLDNVRCTGDNWSKTAHSSRIHLNTIPSNNLPNIATSYHSQLRDNATSALHIGSCLSDISSINSTCTQSRVSRTNSQCQTATGSNRYDQIMTKVPVQDWNDHKEDAYYHTTVACSSSNSLIPVNGAAEMLPKHLENQNTIFSGSKGYNVTGQANVLDHAMVEHDQFKKSAMDTSLMLKHGYLYDHQQKMQTRFSSTNCGSLEDIACAMMKEEQEDGNLLEGDFGCDNYPIGTCM 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31101267 31106089 + Sed0003022.1 Sed05g1730 714356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1730 690 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 357 IPR045279 GO:0009736(InterPro)
Sed05g1730 690 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677(InterPro)
Sed05g1730 690 MobiDBLite consensus disorder prediction 141 197 - -
Sed05g1730 690 MobiDBLite consensus disorder prediction 431 461 - -
Sed05g1730 690 FunFam Two-component response regulator 18 179 - -
Sed05g1730 690 SMART REC_2 18 130 IPR001789 GO:0000160(InterPro)
Sed05g1730 690 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160(InterPro)
Sed05g1730 690 Gene3D - 17 152 - -
Sed05g1730 690 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160(InterPro)
Sed05g1730 690 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
Sed05g1730 690 Gene3D - 194 257 - -
Sed05g1730 690 MobiDBLite consensus disorder prediction 141 179 - -
Sed05g1730 690 CDD REC_typeB_ARR-like 20 134 - -
Sed05g1730 690 MobiDBLite consensus disorder prediction 441 461 - -
Sed05g1730 690 SUPERFAMILY Homeodomain-like 195 255 IPR009057 -
Sed05g1730 690 FunFam Two-component response regulator 194 257 - -
Sed05g1730 690 SUPERFAMILY CheY-like 17 142 IPR011006 -
Sed05g1730 690 PIRSF RR_ARR_type-B 1 690 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Sed05g1730 690 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1730 Sed-Chr5:31101267 Sed13g1980 Sed-Chr13:24680189 9.50E-304 dispersed
Sed13g1979 Sed-Chr13:24680189 Sed05g1730 Sed-Chr5:31101267 0.00E+00 wgd
Sed05g1730 Sed-Chr5:31101267 Sed08g0600 Sed-Chr8:4143160 2.80E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38549 PF00072 Response_reg 2.60E-23 CL0304 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1730 K14491 - csv:101215220 1174.84