Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1737 ATGGAGGAGAGGCATGTTCTGTTTGGTAAATATGAGATCGGAAGGTTGCTAGGGAAAGGCACGTTTGCGAAGGTTTATTACGGGAAGGAATTGGCGTCTGGTGAAAGTGTAGCGATTAAGGTTTTGTGTAAGGATCAGGTCAGGAAGGAAGGAATGATGGAGCAGATCAAGCGCGAGATCTCTATTGCGCATCTTGTTCGTCACCCGAACATCGTTGAGTTGCGAGAAGTAATGGCGACGAAGACGAAGATCTTCTTTGTGATGGATTACGTTCGCGGCGGTGAGCTTTTCGCCAAGATTTCCAGAGGAAAATTCAAGGAAGATGCAGCCAGGAAGTATTTCCAGCAGTTGATTAGCGCGGTGGATTACTGTCACAGCCGTGGAGTTTCGCATCGCGATTTGAAGCCGGAAAATCTGCTGCTGGATGAGAACGAAGATCTCAAGATCTCCGACTTCGGACTCTCCGCCTTACCGGAACAGCTTCGCAACGACGGCCTTCTCCACACGCAGTGCGGAACTCCGGCGTACGTCGCGCCGGAAGTCCTGAGAAGAAAGGGCTACGACGGAGCCAAAGCCGATATCTGGTCTTGTGGTGTGATTTTGTATGTTTTGTTAGCAGGATTTCTTCCATTTCAGGACGAGAACATCATGAACATGTATAAGAAGGTTTTCAAAGCCGAATTCGAATGTCCGCCGTGGTTCTCCGCTGAATCGAAGCGGTTGATTTCGAAAATCCTCGTCGTAGATCCAGGAAGACGAATCACAATCGGAGCAATCACTCGAGTTCCTTGGTTCCGGAAGGATTTCTCCAGATCTCTCTCGTTCACAGCGAAAACAGAGGATTCCGATTTCGATTCCGATTTCAATTTCAATTCCGATTCCGAGAGTCCGAAACTTTCTACGCCGAAATTCTTCAACGCGTTCGAGTTGATATCGTCGATGTCGTCCGGATTCGATCTATCGAGTTTGTTCGAGAACAAAAGGAAGACAGGATCCATGTTCACATCGAGATGCACGGTGTCGACGATCATTGAGAAGATCGAGACCGCGGCGAAGAGGCTGAGCTTCAAGGTATCGGAGGTGAAGGATTTCAAGCTCCGGCTGCAAGGACAGGCGGAGGGAAGAAAAGGAAAGCTGTCAGTGACGGCGGAGGTGTTCGAAATAGCGCCGGAAATCGCCATTGTTGAATTTTCGAAGTCCTCCGGCGATACTCTGGAATATTCCAAGTTCTGTGAAGAAGACGTTCGGCCGGCGCTGAAAGATATTGTTTGGACATGGCAAGGGGAATGTGTCCCCAACGCTGACGGACGTAACGGCCAATTTGACGGCGACCAATTTTTGTGA 1344 49.26 MEERHVLFGKYEIGRLLGKGTFAKVYYGKELASGESVAIKVLCKDQVRKEGMMEQIKREISIAHLVRHPNIVELREVMATKTKIFFVMDYVRGGELFAKISRGKFKEDAARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENEDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGAKADIWSCGVILYVLLAGFLPFQDENIMNMYKKVFKAEFECPPWFSAESKRLISKILVVDPGRRITIGAITRVPWFRKDFSRSLSFTAKTEDSDFDSDFNFNSDSESPKLSTPKFFNAFELISSMSSGFDLSSLFENKRKTGSMFTSRCTVSTIIEKIETAAKRLSFKVSEVKDFKLRLQGQAEGRKGKLSVTAEVFEIAPEIAIVEFSKSSGDTLEYSKFCEEDVRPALKDIVWTWQGECVPNADGRNGQFDGDQFL 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31229042 31231037 + Sed0009911.1 Sed05g1737 714363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1737 447 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524(InterPro)
Sed05g1737 447 SUPERFAMILY Protein kinase-like (PK-like) 7 278 IPR011009 -
Sed05g1737 447 FunFam Non-specific serine/threonine protein kinase 4 302 - -
Sed05g1737 447 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Sed05g1737 447 Gene3D Kinase associated domain 1, KA1 300 425 - -
Sed05g1737 447 SMART serkin_6 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1737 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1737 447 ProSiteProfiles NAF domain profile. 300 325 IPR018451 GO:0007165(InterPro)
Sed05g1737 447 Gene3D Transferase(Phosphotransferase) domain 1 91 271 - -
Sed05g1737 447 FunFam Non-specific serine/threonine protein kinase 300 424 - -
Sed05g1737 447 Pfam NAF domain 302 358 IPR004041 GO:0007165(InterPro)
Sed05g1737 447 CDD STKc_SnRK3 10 264 - -
Sed05g1737 447 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1737 447 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 417 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed05g1737 447 FunFam Non-specific serine/threonine protein kinase 2 90 - -
Sed05g1737 447 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1737 447 CDD CIPK_C 306 420 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1737 Sed-Chr5:31229042 Sed06g2051 Sed-Chr6:44599024 5.80E-169 dispersed
Sed05g1737 Sed-Chr5:31229042 Sed08g0592 Sed-Chr8:4062597 6.90E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79176 PF00069 Pkinase 4.20E-73 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1737 - - - 0.0