Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1739 ATGGATATTTTCTTAGACCTTAATGTGAATCCTGCTTCATCTTATGGTAATTCAGCCAAGGATGTGGCTCATGATTCTTCAAAAATAGAGTTTGAAGCTGGAAAAATGTATTGGAATGAAGAAAAACTCTCACTAAGCTTGGCAAATAAGGGAAGCGATTCGAGATCGACAATAGAAGAAGAGCTGGATAGAAAGGTTAAAGAGAATGGGAAGTTAAATCAGATGTTAAGATCCATGTATGAGAAATACATGAATCTTCAAAAAGAAGTTGTGTATTTGATGAGCCAACAAAACCAGAACTCAGAAATAGAAGCAATTTCGAGGAAGAGAAAGGCAGAAGGAGAAGAATTAGAGTATGAGAATTTCGAAGGGATTAGCACAAGGGATGAAGATTTCAACAGGTGGCTTAGAAGGCCAAAATTAAATGGAAATTCAAAGGTTTCTAAGGTTTTTGTGCAAAAAGATGCATCAGATCCAAGTTTGGTGGTGAAAGATGGATATCAATGGAGGAAATATGGGCAAAAAGTCACAAGAGACAACCCTTCTCCTAGGGCTTACTTCAAGTGCTCCTCTGCCCCAAATTGTCCTGTAAAAAAGAAGGTGCAAAGAAGCTTGGAAGATCCAACAATTTTGGTAGCTACTTACGAGGGAGAACACAGCCATGCTAGCCATTTTCAAACTGAGTTATCTTTAAGGTCCATCAATGGCGGCAAAGGCAGCGCAGTCCCCGTCCTAGCCACGATCAAGCCATCGTGCGCCACTGTGACCCTCGATTTGATTCACGAAGACGGGCTGTTTAAGAGTCCAAAAGATTACGCGTCTTCAGAGTCGGCAGCGTCGACGGAGGCAGCGGTTTGGCAGGAGTTTTTGGTACAGAAAATGGCCTCCTCTTTGAAGAAGGATCCTGAATTTGCTGGCATTGTTGCTGGTGCCATTTCAGGCAAGGTTTTGGGAAACCAAACAAATAGAGAATAA 975 41.74 MDIFLDLNVNPASSYGNSAKDVAHDSSKIEFEAGKMYWNEEKLSLSLANKGSDSRSTIEEELDRKVKENGKLNQMLRSMYEKYMNLQKEVVYLMSQQNQNSEIEAISRKRKAEGEELEYENFEGISTRDEDFNRWLRRPKLNGNSKVSKVFVQKDASDPSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSSAPNCPVKKKVQRSLEDPTILVATYEGEHSHASHFQTELSLRSINGGKGSAVPVLATIKPSCATVTLDLIHEDGLFKSPKDYASSESAASTEAAVWQEFLVQKMASSLKKDPEFAGIVAGAISGKVLGNQTNRE 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31255840 31259729 + Sed0021636.1 Sed05g1739 714365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1739 324 Pfam WRKY DNA -binding domain 164 221 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1739 324 Coils Coil 69 89 - -
Sed05g1739 324 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 42 319 IPR044810 GO:0003700(InterPro)
Sed05g1739 324 ProSiteProfiles WRKY domain profile. 158 224 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1739 324 Gene3D WRKY domain 146 223 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1739 324 SMART WRKY_cls 163 223 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1739 324 SUPERFAMILY WRKY DNA-binding domain 161 222 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1739 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1739 Sed-Chr5:31255840 Sed13g1970 Sed-Chr13:24561107 3.80E-154 dispersed
Sed11g1143 Sed-Chr11:27266617 Sed05g1739 Sed-Chr5:31255840 1.50E-38 wgd
Sed13g1969 Sed-Chr13:24561107 Sed05g1739 Sed-Chr5:31255840 1.50E-153 wgd
Sed03g1643 Sed-Chr3:10532981 Sed05g1739 Sed-Chr5:31255840 3.10E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g507 . . . . . . . . . . . . . . Sed11g1143 . . Bhi04g00046 Tan02g2760 Cmetu03g1247 . Hepe10g0218 . Lcy13g1831 . . . . . . . . . . . . . . . . . . . . . . . Sed05g1739 . . . . . . . . Bhi09g03003 Tan01g3569 . . Hepe01g1969 Mch11g0506 . . . . . . . . . . . Cme07g00117
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005027 2 3 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 0 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38551 PF03106 WRKY 2.10E-23 CL0274 Sed TF