Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1741 ATGGTGTTCAATTTCCGAGAGGGGGAGGGTCCAAGCCTGGTTACTAATATATTATCTATGTATGATATGACTGTAATGGACTATCCCCGACAATATGAAGGTTGCCCTCTACTCACCATGGAGATGCTCCACCACTACTTAAGATCTAGTGAAAGCTGGCTTTCGCTCGGGCAACAAAATGTACTTTTGATGCACTGTGAACGAGGGGGGTGGCCGGTCTTGGCTTTCATGTTGGCTGCTCTTTTGACTTACCGGAGGCAATATGCCGGGGAGCAGAAAACTTTGGACATGATTTACAAGCAAGCACCTCGGGAGCTTTTGCAGTTGATGTCACCTCTTAATCCATTGCCTTCACAACTGAGGTATCTTCAATATTTATCAAGAAGAAATGTGGGATCACAATGGCCTCCGCTTGACAGGGCGCTTACTCTAGAATGTATAATTATTAGATCCATTCCTAATATGGATGGGGAAGGTGGTTGCCGCCCAATATTTAGGATATATGGACAGGATCCCTTTATGGCTGCTGATCGAACTTCCAAAGTATTGTTCTCAACCCCCAAAAGGAGTAAACTTGTTCGTCAGTATAAGCAGGTAGATTGTGAACTAGTTAAAATTGATATCAATTGCCACATTCAATCTGACGTTGTTCTTGAATGTATAAGTTTGGACAATGATCTGGAAAGGGAAGAGATGATGTTTCGAGTTATGTTTAATACAACATTTATAAGGTCAAACATTTTGATGCTTAACCGTGATGACATTGATATCTTATGGCATGGAAAGGATAAATTTCCAAAAGATTTTAGAGTAGAGGTTCTTTTCTCAGAAATGGATACTACCGCATCACTTATTTCAGTTGAATTTCCAAACATTGAGGAGAAAGATGGTCTTCCAATTGAAGCATTTGCTAGAGTTCAAGAGATGTTTAGCAATGTAGACTGGCTAAGCCCAAAGGCAGATGCAGCTCTTAATATGCTTCAGAAAATAACAGCTACAAATTTTCTTCAAGAGAAACGGGCTAGTCTTGGCTCTTTCGACCAGTTGCTCAGTTTTGGCTCTTTCGACAAAAACCAGTTGCTCGATTTATCTTTTGAAAAACTACTCTCAGAAGCAGAGACATATGAAGACAATATTAGTAGTCCCCGATCAAAAATCGAAACAAAACAATCTCAACCTTCTTCTGAGCTATCTGGCTTAGCAAGTTCAGAGAGATCAAAGATTGAACCTTCAGAATTGCAGGCTGCTCTCCAACTACCACCTCAGACAAAAATCATTACCCAACGAATGCCTGAACCTTCCTTTTTGACATCAATCTCCTTCCGTAGTCCTGTGCAAGGTTCACCTCGCCCAATGTTAAGATATAATAGTGCACCCTCAGCTCTTGGCATTACAACTTTATTACACGATCATTCCGAAATTAATTGCAAAGAAGTCGTACATCCTGCAACGATATCTTCACCATCATCTGGCTGCATGACCACGAATGCTCTAGATTCACCTAAAGATATTCAGCCTAGTAAGCTTCCTATTTTGTCTCTCCCGCTGCCATTAGAGCCAAGCTATACATTAGAAAATTCTTCCACCACCATGTCAACTTCAACCATTCCCGATTCGTTGTCACTCCACCAACTTTCTTTAAAACCTATTAAGGCTTCAATTTCTCACTCATCTCCAATGGCATCACGAAGGAGAAGTCAAGTATCACCCTCATTACAACCAACACCTACCCCTTTTCCTGGGGTGTCTCCACCCTCTTTCGGTGAAAGCTTACATTCAATATCCTCTTCTTCTCCTTTATTAAGACCATCTCTATCTTCTGATACGAAGGAACCATCTTCCATTTCCCCTCCTCCCCTCTCTCATCTGGTTTCACCTTCATTTTTAGTAGCATCTCCATCTTCTAATAGGACAAATGGCTCAATTTCCCCATCTCCACCACAACCTTCTTTTAAAACACTATTATTATCCTCTACAAAGACAACTTCATTGGATGATCGTGTGGTTTTTTCTCAGTCACCTAAAAAGAATTTGGTGATCGCGCCTCCCTCTCCTTCACCACCATCTCCTGCTCCATGTTCTAGCCCTAAACCTTCAACCCCACCCTTGCTCCCGTCTTCTTTGATTTCGACATCTACTTGTGGTTCTAGTATCACATTTTCAGGGTCGGTGCCACCACCTCCTCTTCCTCCCAGTCTTGCACCTCAGGATTCTACCATTGTAGTTAAGAACTTGGCAGTTGTACCTGGCCCTCCAACTCCCCCACCTCCACCCTCTCTTAGTTCTTCTCTAGGTCCTACTATTGTATCTTTAGTGCCTTCTCCTCCTCCTCCTCCTCCTAATGTTTCTGCAACAACCCAAGTCTCCGGTCCCCCTCCCCCTCCCCCTCCACCTTTTGCAAATTCTGGGTCTACCCCATGTCCAAGTGTTGTAACGTCAGCTCCACCGGCTCCACCTCCTCCAGGATTTTCAATTAAGGGTTCAACAACACATGCTCCACCTGGACCACCTTCTGCCCCTGTGCCACCTTCTGCACCTGTGCCACCTTCTGCTCCTGGACCACCTTCTGCTCCTGGACCACCTTCCGTTCCTGGACCACCTTCTATTCCTGGTTTATTCGGTGGAAAGGGACGAGCCATCGGACGTTTGAACCCTAAAAACCTATCTCAACCTAAAAAGTCCAATTTGAAGCCTTATCACTGGTTAAAATTAACAAGGGCCATGCAAGGAAGCTTATGGGCAGAGACACAAAAGGCAGATGAAGCTTGCAAAGCTCCGGAGTTTGACATGTCCGAACTTGAAAGTCTTTTCTCTGCATCTGCACCGAATTCAGATGCGGGACCTGGTGGAAATTCAAATCGTCGTGCCTCAGGGCCAAAGACGGAAAAAGTTAATTTGATCGAACTTCGTCGGGCCTATAATTGCGAAATTATGCTCTCGAAAGTTAAGATTCCTTTGCCCGATATGATGTGCTCAGTCCTTGCATTGGATGAGTCGGCATTAGATGTGGATCAGGTTGAGAACCTAATCAAATTTTGTCCAACAAAGGAAGAAATGGAATTACTTAAGGGGTACACTGGAGACCATGACAACTTGGGAAAATGCGAACAATTCTTCTTAGAATTGATGAAAGTCCCACGAGTTGAATCCAAGCTAAGGGTTTTTTCTTTCAAGATACAGTTTCATATGCAGGTCTTTGAACTTAGAAATAGTCTGAATACTGTCAATTCGGCATCTGATGAGATCAGAGGTTCGACAAAGTTGAAAAGGGTAATGCAAACAATCCTTTCGTTGGGCAATGCGTTGAACCACGGAACGGCTAGAGGCTCTGCTATTGGATTTCGGCTTGATAGTCTCCTCAAACTCACTGATACGCGAGCCCGAAACAATAAGATGACTCTCATGCATTATCTATGTAAGGTGCTTGGGGAAAAGCTGCCAGAACTCTTAGATTTTCCGAAGGATCTTGCGAGTTTGGAAGTTTCTACAAGGATACAACTGAAATATTTGGCAGAGGAAATGCAAGCCATAAGCAAAGGGCTTGAGAAGGTTGTTCAGGAATTGTCTAATTCAGAAAGCGATGGGCCCATTTCAGAAACTTTTTGCCTGACTTTAAAAGACTTTCTTTCACATGCGGAGTCCGAAGTCAGGTCTCTTGCCTCACTTTATTCTAATGTGGGTAGAAATGCCGATGCACTGGCTCTTTATTTCGGCGAGGATCCAGCACGGTGCCCTTTCGAGCAAGTTGTTTCTACACTGCTCATTTTCATGCGGATGTTTGTGCGAGCGCATGAAGAAAACTGTAAGCAGCTCGAATACGAAAGGAAGAAAGCACTGAAGGAAGCAGCAGAAAAGGAGAAGCTAAAGGTCAGCAGCCCGAAAAAGGGGTCACAATCCCGAGTGTTCTAA 3909 43.72 MVFNFREGEGPSLVTNILSMYDMTVMDYPRQYEGCPLLTMEMLHHYLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLTYRRQYAGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYLSRRNVGSQWPPLDRALTLECIIIRSIPNMDGEGGCRPIFRIYGQDPFMAADRTSKVLFSTPKRSKLVRQYKQVDCELVKIDINCHIQSDVVLECISLDNDLEREEMMFRVMFNTTFIRSNILMLNRDDIDILWHGKDKFPKDFRVEVLFSEMDTTASLISVEFPNIEEKDGLPIEAFARVQEMFSNVDWLSPKADAALNMLQKITATNFLQEKRASLGSFDQLLSFGSFDKNQLLDLSFEKLLSEAETYEDNISSPRSKIETKQSQPSSELSGLASSERSKIEPSELQAALQLPPQTKIITQRMPEPSFLTSISFRSPVQGSPRPMLRYNSAPSALGITTLLHDHSEINCKEVVHPATISSPSSGCMTTNALDSPKDIQPSKLPILSLPLPLEPSYTLENSSTTMSTSTIPDSLSLHQLSLKPIKASISHSSPMASRRRSQVSPSLQPTPTPFPGVSPPSFGESLHSISSSSPLLRPSLSSDTKEPSSISPPPLSHLVSPSFLVASPSSNRTNGSISPSPPQPSFKTLLLSSTKTTSLDDRVVFSQSPKKNLVIAPPSPSPPSPAPCSSPKPSTPPLLPSSLISTSTCGSSITFSGSVPPPPLPPSLAPQDSTIVVKNLAVVPGPPTPPPPPSLSSSLGPTIVSLVPSPPPPPPNVSATTQVSGPPPPPPPPFANSGSTPCPSVVTSAPPAPPPPGFSIKGSTTHAPPGPPSAPVPPSAPVPPSAPGPPSAPGPPSVPGPPSIPGLFGGKGRAIGRLNPKNLSQPKKSNLKPYHWLKLTRAMQGSLWAETQKADEACKAPEFDMSELESLFSASAPNSDAGPGGNSNRRASGPKTEKVNLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDESALDVDQVENLIKFCPTKEEMELLKGYTGDHDNLGKCEQFFLELMKVPRVESKLRVFSFKIQFHMQVFELRNSLNTVNSASDEIRGSTKLKRVMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLGEKLPELLDFPKDLASLEVSTRIQLKYLAEEMQAISKGLEKVVQELSNSESDGPISETFCLTLKDFLSHAESEVRSLASLYSNVGRNADALALYFGEDPARCPFEQVVSTLLIFMRMFVRAHEENCKQLEYERKKALKEAAEKEKLKVSSPKKGSQSRVF 1302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31263875 31275200 - Sed0026649.2 Sed05g1741 714367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1741 1302 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 16 127 IPR029021 -
Sed05g1741 1302 MobiDBLite consensus disorder prediction 674 894 - -
Sed05g1741 1302 MobiDBLite consensus disorder prediction 588 652 - -
Sed05g1741 1302 ProSiteProfiles Formin homology-2 (FH2) domain profile. 885 1286 IPR015425 -
Sed05g1741 1302 SMART PTEN_C2_2 137 277 IPR014020 -
Sed05g1741 1302 Pfam Formin Homology 2 Domain 890 1260 IPR015425 -
Sed05g1741 1302 MobiDBLite consensus disorder prediction 833 868 - -
Sed05g1741 1302 MobiDBLite consensus disorder prediction 770 803 - -
Sed05g1741 1302 SMART it6_source 885 1301 IPR015425 -
Sed05g1741 1302 MobiDBLite consensus disorder prediction 553 652 - -
Sed05g1741 1302 Gene3D Formin, FH2 domain 879 1271 IPR042201 -
Sed05g1741 1302 MobiDBLite consensus disorder prediction 939 959 - -
Sed05g1741 1302 MobiDBLite consensus disorder prediction 379 405 - -
Sed05g1741 1302 MobiDBLite consensus disorder prediction 680 703 - -
Sed05g1741 1302 Gene3D Protein tyrosine phosphatase superfamily 1 131 IPR029021 -
Sed05g1741 1302 MobiDBLite consensus disorder prediction 704 722 - -
Sed05g1741 1302 Coils Coil 1261 1288 - -
Sed05g1741 1302 PANTHER FORMIN-J 789 1287 IPR051144 -
Sed05g1741 1302 Pfam C2 domain of PTEN tumour-suppressor protein 139 277 IPR014020 -
Sed05g1741 1302 SUPERFAMILY Formin homology 2 domain (FH2 domain) 962 1287 - -
Sed05g1741 1302 Gene3D - 136 281 - -
Sed05g1741 1302 ProSiteProfiles C2 tensin-type domain profile. 139 278 IPR014020 -
Sed05g1741 1302 MobiDBLite consensus disorder prediction 384 405 - -
Sed05g1741 1302 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 141 278 IPR035892 -
Sed05g1741 1302 MobiDBLite consensus disorder prediction 553 572 - -
Sed05g1741 1302 MobiDBLite consensus disorder prediction 748 762 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1738 Sed-Chr5:31240642 Sed05g1741 Sed-Chr5:31263875 3.00E-40 dispersed
Sed05g1741 Sed-Chr5:31263875 Sed05g1743 Sed-Chr5:31268078 0.00E+00 dispersed
Sed05g1740 Sed-Chr5:31263875 Sed05g1741 Sed-Chr5:31263875 0.00E+00 tandem
Sed05g1741 Sed-Chr5:31263875 Sed05g1742 Sed-Chr5:31263875 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1741 K28090 - csv:101214019 1661.35