Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g1741 | ATGGTGTTCAATTTCCGAGAGGGGGAGGGTCCAAGCCTGGTTACTAATATATTATCTATGTATGATATGACTGTAATGGACTATCCCCGACAATATGAAGGTTGCCCTCTACTCACCATGGAGATGCTCCACCACTACTTAAGATCTAGTGAAAGCTGGCTTTCGCTCGGGCAACAAAATGTACTTTTGATGCACTGTGAACGAGGGGGGTGGCCGGTCTTGGCTTTCATGTTGGCTGCTCTTTTGACTTACCGGAGGCAATATGCCGGGGAGCAGAAAACTTTGGACATGATTTACAAGCAAGCACCTCGGGAGCTTTTGCAGTTGATGTCACCTCTTAATCCATTGCCTTCACAACTGAGGTATCTTCAATATTTATCAAGAAGAAATGTGGGATCACAATGGCCTCCGCTTGACAGGGCGCTTACTCTAGAATGTATAATTATTAGATCCATTCCTAATATGGATGGGGAAGGTGGTTGCCGCCCAATATTTAGGATATATGGACAGGATCCCTTTATGGCTGCTGATCGAACTTCCAAAGTATTGTTCTCAACCCCCAAAAGGAGTAAACTTGTTCGTCAGTATAAGCAGGTAGATTGTGAACTAGTTAAAATTGATATCAATTGCCACATTCAATCTGACGTTGTTCTTGAATGTATAAGTTTGGACAATGATCTGGAAAGGGAAGAGATGATGTTTCGAGTTATGTTTAATACAACATTTATAAGGTCAAACATTTTGATGCTTAACCGTGATGACATTGATATCTTATGGCATGGAAAGGATAAATTTCCAAAAGATTTTAGAGTAGAGGTTCTTTTCTCAGAAATGGATACTACCGCATCACTTATTTCAGTTGAATTTCCAAACATTGAGGAGAAAGATGGTCTTCCAATTGAAGCATTTGCTAGAGTTCAAGAGATGTTTAGCAATGTAGACTGGCTAAGCCCAAAGGCAGATGCAGCTCTTAATATGCTTCAGAAAATAACAGCTACAAATTTTCTTCAAGAGAAACGGGCTAGTCTTGGCTCTTTCGACCAGTTGCTCAGTTTTGGCTCTTTCGACAAAAACCAGTTGCTCGATTTATCTTTTGAAAAACTACTCTCAGAAGCAGAGACATATGAAGACAATATTAGTAGTCCCCGATCAAAAATCGAAACAAAACAATCTCAACCTTCTTCTGAGCTATCTGGCTTAGCAAGTTCAGAGAGATCAAAGATTGAACCTTCAGAATTGCAGGCTGCTCTCCAACTACCACCTCAGACAAAAATCATTACCCAACGAATGCCTGAACCTTCCTTTTTGACATCAATCTCCTTCCGTAGTCCTGTGCAAGGTTCACCTCGCCCAATGTTAAGATATAATAGTGCACCCTCAGCTCTTGGCATTACAACTTTATTACACGATCATTCCGAAATTAATTGCAAAGAAGTCGTACATCCTGCAACGATATCTTCACCATCATCTGGCTGCATGACCACGAATGCTCTAGATTCACCTAAAGATATTCAGCCTAGTAAGCTTCCTATTTTGTCTCTCCCGCTGCCATTAGAGCCAAGCTATACATTAGAAAATTCTTCCACCACCATGTCAACTTCAACCATTCCCGATTCGTTGTCACTCCACCAACTTTCTTTAAAACCTATTAAGGCTTCAATTTCTCACTCATCTCCAATGGCATCACGAAGGAGAAGTCAAGTATCACCCTCATTACAACCAACACCTACCCCTTTTCCTGGGGTGTCTCCACCCTCTTTCGGTGAAAGCTTACATTCAATATCCTCTTCTTCTCCTTTATTAAGACCATCTCTATCTTCTGATACGAAGGAACCATCTTCCATTTCCCCTCCTCCCCTCTCTCATCTGGTTTCACCTTCATTTTTAGTAGCATCTCCATCTTCTAATAGGACAAATGGCTCAATTTCCCCATCTCCACCACAACCTTCTTTTAAAACACTATTATTATCCTCTACAAAGACAACTTCATTGGATGATCGTGTGGTTTTTTCTCAGTCACCTAAAAAGAATTTGGTGATCGCGCCTCCCTCTCCTTCACCACCATCTCCTGCTCCATGTTCTAGCCCTAAACCTTCAACCCCACCCTTGCTCCCGTCTTCTTTGATTTCGACATCTACTTGTGGTTCTAGTATCACATTTTCAGGGTCGGTGCCACCACCTCCTCTTCCTCCCAGTCTTGCACCTCAGGATTCTACCATTGTAGTTAAGAACTTGGCAGTTGTACCTGGCCCTCCAACTCCCCCACCTCCACCCTCTCTTAGTTCTTCTCTAGGTCCTACTATTGTATCTTTAGTGCCTTCTCCTCCTCCTCCTCCTCCTAATGTTTCTGCAACAACCCAAGTCTCCGGTCCCCCTCCCCCTCCCCCTCCACCTTTTGCAAATTCTGGGTCTACCCCATGTCCAAGTGTTGTAACGTCAGCTCCACCGGCTCCACCTCCTCCAGGATTTTCAATTAAGGGTTCAACAACACATGCTCCACCTGGACCACCTTCTGCCCCTGTGCCACCTTCTGCACCTGTGCCACCTTCTGCTCCTGGACCACCTTCTGCTCCTGGACCACCTTCCGTTCCTGGACCACCTTCTATTCCTGGTTTATTCGGTGGAAAGGGACGAGCCATCGGACGTTTGAACCCTAAAAACCTATCTCAACCTAAAAAGTCCAATTTGAAGCCTTATCACTGGTTAAAATTAACAAGGGCCATGCAAGGAAGCTTATGGGCAGAGACACAAAAGGCAGATGAAGCTTGCAAAGCTCCGGAGTTTGACATGTCCGAACTTGAAAGTCTTTTCTCTGCATCTGCACCGAATTCAGATGCGGGACCTGGTGGAAATTCAAATCGTCGTGCCTCAGGGCCAAAGACGGAAAAAGTTAATTTGATCGAACTTCGTCGGGCCTATAATTGCGAAATTATGCTCTCGAAAGTTAAGATTCCTTTGCCCGATATGATGTGCTCAGTCCTTGCATTGGATGAGTCGGCATTAGATGTGGATCAGGTTGAGAACCTAATCAAATTTTGTCCAACAAAGGAAGAAATGGAATTACTTAAGGGGTACACTGGAGACCATGACAACTTGGGAAAATGCGAACAATTCTTCTTAGAATTGATGAAAGTCCCACGAGTTGAATCCAAGCTAAGGGTTTTTTCTTTCAAGATACAGTTTCATATGCAGGTCTTTGAACTTAGAAATAGTCTGAATACTGTCAATTCGGCATCTGATGAGATCAGAGGTTCGACAAAGTTGAAAAGGGTAATGCAAACAATCCTTTCGTTGGGCAATGCGTTGAACCACGGAACGGCTAGAGGCTCTGCTATTGGATTTCGGCTTGATAGTCTCCTCAAACTCACTGATACGCGAGCCCGAAACAATAAGATGACTCTCATGCATTATCTATGTAAGGTGCTTGGGGAAAAGCTGCCAGAACTCTTAGATTTTCCGAAGGATCTTGCGAGTTTGGAAGTTTCTACAAGGATACAACTGAAATATTTGGCAGAGGAAATGCAAGCCATAAGCAAAGGGCTTGAGAAGGTTGTTCAGGAATTGTCTAATTCAGAAAGCGATGGGCCCATTTCAGAAACTTTTTGCCTGACTTTAAAAGACTTTCTTTCACATGCGGAGTCCGAAGTCAGGTCTCTTGCCTCACTTTATTCTAATGTGGGTAGAAATGCCGATGCACTGGCTCTTTATTTCGGCGAGGATCCAGCACGGTGCCCTTTCGAGCAAGTTGTTTCTACACTGCTCATTTTCATGCGGATGTTTGTGCGAGCGCATGAAGAAAACTGTAAGCAGCTCGAATACGAAAGGAAGAAAGCACTGAAGGAAGCAGCAGAAAAGGAGAAGCTAAAGGTCAGCAGCCCGAAAAAGGGGTCACAATCCCGAGTGTTCTAA | 3909 | 43.72 | MVFNFREGEGPSLVTNILSMYDMTVMDYPRQYEGCPLLTMEMLHHYLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLTYRRQYAGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYLSRRNVGSQWPPLDRALTLECIIIRSIPNMDGEGGCRPIFRIYGQDPFMAADRTSKVLFSTPKRSKLVRQYKQVDCELVKIDINCHIQSDVVLECISLDNDLEREEMMFRVMFNTTFIRSNILMLNRDDIDILWHGKDKFPKDFRVEVLFSEMDTTASLISVEFPNIEEKDGLPIEAFARVQEMFSNVDWLSPKADAALNMLQKITATNFLQEKRASLGSFDQLLSFGSFDKNQLLDLSFEKLLSEAETYEDNISSPRSKIETKQSQPSSELSGLASSERSKIEPSELQAALQLPPQTKIITQRMPEPSFLTSISFRSPVQGSPRPMLRYNSAPSALGITTLLHDHSEINCKEVVHPATISSPSSGCMTTNALDSPKDIQPSKLPILSLPLPLEPSYTLENSSTTMSTSTIPDSLSLHQLSLKPIKASISHSSPMASRRRSQVSPSLQPTPTPFPGVSPPSFGESLHSISSSSPLLRPSLSSDTKEPSSISPPPLSHLVSPSFLVASPSSNRTNGSISPSPPQPSFKTLLLSSTKTTSLDDRVVFSQSPKKNLVIAPPSPSPPSPAPCSSPKPSTPPLLPSSLISTSTCGSSITFSGSVPPPPLPPSLAPQDSTIVVKNLAVVPGPPTPPPPPSLSSSLGPTIVSLVPSPPPPPPNVSATTQVSGPPPPPPPPFANSGSTPCPSVVTSAPPAPPPPGFSIKGSTTHAPPGPPSAPVPPSAPVPPSAPGPPSAPGPPSVPGPPSIPGLFGGKGRAIGRLNPKNLSQPKKSNLKPYHWLKLTRAMQGSLWAETQKADEACKAPEFDMSELESLFSASAPNSDAGPGGNSNRRASGPKTEKVNLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDESALDVDQVENLIKFCPTKEEMELLKGYTGDHDNLGKCEQFFLELMKVPRVESKLRVFSFKIQFHMQVFELRNSLNTVNSASDEIRGSTKLKRVMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLGEKLPELLDFPKDLASLEVSTRIQLKYLAEEMQAISKGLEKVVQELSNSESDGPISETFCLTLKDFLSHAESEVRSLASLYSNVGRNADALALYFGEDPARCPFEQVVSTLLIFMRMFVRAHEENCKQLEYERKKALKEAAEKEKLKVSSPKKGSQSRVF | 1302 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 31263875 | 31275200 | - | Sed0026649.2 | Sed05g1741 | 714367 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g1741 | 1302 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 16 | 127 | IPR029021 | - | |
Sed05g1741 | 1302 | MobiDBLite | consensus disorder prediction | 674 | 894 | - | - | |
Sed05g1741 | 1302 | MobiDBLite | consensus disorder prediction | 588 | 652 | - | - | |
Sed05g1741 | 1302 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 885 | 1286 | IPR015425 | - | |
Sed05g1741 | 1302 | SMART | PTEN_C2_2 | 137 | 277 | IPR014020 | - | |
Sed05g1741 | 1302 | Pfam | Formin Homology 2 Domain | 890 | 1260 | IPR015425 | - | |
Sed05g1741 | 1302 | MobiDBLite | consensus disorder prediction | 833 | 868 | - | - | |
Sed05g1741 | 1302 | MobiDBLite | consensus disorder prediction | 770 | 803 | - | - | |
Sed05g1741 | 1302 | SMART | it6_source | 885 | 1301 | IPR015425 | - | |
Sed05g1741 | 1302 | MobiDBLite | consensus disorder prediction | 553 | 652 | - | - | |
Sed05g1741 | 1302 | Gene3D | Formin, FH2 domain | 879 | 1271 | IPR042201 | - | |
Sed05g1741 | 1302 | MobiDBLite | consensus disorder prediction | 939 | 959 | - | - | |
Sed05g1741 | 1302 | MobiDBLite | consensus disorder prediction | 379 | 405 | - | - | |
Sed05g1741 | 1302 | MobiDBLite | consensus disorder prediction | 680 | 703 | - | - | |
Sed05g1741 | 1302 | Gene3D | Protein tyrosine phosphatase superfamily | 1 | 131 | IPR029021 | - | |
Sed05g1741 | 1302 | MobiDBLite | consensus disorder prediction | 704 | 722 | - | - | |
Sed05g1741 | 1302 | Coils | Coil | 1261 | 1288 | - | - | |
Sed05g1741 | 1302 | PANTHER | FORMIN-J | 789 | 1287 | IPR051144 | - | |
Sed05g1741 | 1302 | Pfam | C2 domain of PTEN tumour-suppressor protein | 139 | 277 | IPR014020 | - | |
Sed05g1741 | 1302 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 962 | 1287 | - | - | |
Sed05g1741 | 1302 | Gene3D | - | 136 | 281 | - | - | |
Sed05g1741 | 1302 | ProSiteProfiles | C2 tensin-type domain profile. | 139 | 278 | IPR014020 | - | |
Sed05g1741 | 1302 | MobiDBLite | consensus disorder prediction | 384 | 405 | - | - | |
Sed05g1741 | 1302 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 141 | 278 | IPR035892 | - | |
Sed05g1741 | 1302 | MobiDBLite | consensus disorder prediction | 553 | 572 | - | - | |
Sed05g1741 | 1302 | MobiDBLite | consensus disorder prediction | 748 | 762 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1738 | Sed-Chr5:31240642 | Sed05g1741 | Sed-Chr5:31263875 | 3.00E-40 | dispersed | |
Sed05g1741 | Sed-Chr5:31263875 | Sed05g1743 | Sed-Chr5:31268078 | 0.00E+00 | dispersed | |
Sed05g1740 | Sed-Chr5:31263875 | Sed05g1741 | Sed-Chr5:31263875 | 0.00E+00 | tandem | |
Sed05g1741 | Sed-Chr5:31263875 | Sed05g1742 | Sed-Chr5:31263875 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g1741 | K28090 | - | csv:101214019 | 1661.35 |