Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g1743 | ATGGCGTTATTTCGCAAGTTCTTTTATCGGAAGCCACCCGACGGGCTTTTAGAGATATCCGAAAGGGTTTATGTTTTCGACTGCTGCTTTACAACGGAGGTCTTGGAAGAAGACGAATACAAAGTCTATATTGGAGGCATCGCGGCACAACTTCGTGATACTCTCACCGATTCTTCATTCATGGTGTTCAATTTCCGAGAGGGGGAGGGTCCAAGCCTGGTTACTAATATATTATCTATGTATGATATGACTGTAATGGACTATCCCCGACAATATGAAGGTTGCCCTCTACTCACCATGGAGATGCTCCACCACTACTTAAGATCTAGTGAAAGCTGGCTTTCGCTCGGGCAACAAAATGTACTTTTGATGCACTGTGAACGAGGGGGGTGGCCGGTCTTGGCTTTCATGTTGGCTGCTCTTTTGACTTACCGGAGGCAATATGCCGGGGAGCAGAAAACTTTGGACATGATTTACAAGCAAGCACCTCGGGAGCTTTTGCAGTTGATGTCACCTCTTAATCCATTGCCTTCACAACTGAGGTATCTTCAATATTTATCAAGAAGAAATGTGGGATCACAATGGCCTCCGCTTGACAGGGCGCTTACTCTAGAATGTATAATTATTAGATCCATTCCTAATATGGATGGGGAAGGTGGTTGCCGCCCAATATTTAGGATATATGGACAGGATCCCTTTATGGCTGCTGATCGAACTTCCAAAGTATTGTTCTCAACCCCCAAAAGGAGTAAACTTGTTCGTCAGTATAAGCAGGTAGATTGTGAACTAGTTAAAATTGATATCAATTGCCACATTCAATCTGACGTTGTTCTTGAATGTATAAGTTTGGACAATGATCTGGAAAGGGAAGAGATGATGTTTCGAGTTATGTTTAATACAACATTTATAAGGTCAAACATTTTGATGCTTAACCGTGATGACATTGATATCTTATGGCATGGAAAGGATAAATTTCCAAAAGATTTTAGAGTAGAGGTTCTTTTCTCAGAAATGGATACTACCGCATCACTTATTTCAGTTGAATTTCCAAACATTGAGGAGAAAGATGGTCTTCCAATTGAAGCATTTGCTAGAGTTCAAGAGATGTTTAGCAATGTAGACTGGCTAAGCCCAAAGGCAGATGCAGCTCTTAATATGCTTCAGAAAATAACAGCTACAAATTTTCTTCAAGAGAAACGGGCTAGTCTTGGCTCTTTCGACCAGTTGCTCAGTTTTGGCTCTTTCGACAAAAACCAGTTGCTCGATTTATCTTTTGAAAAACTACTCTCAGAAGCAGAGACATATGAAGACAATATTAGTAGTCCCCGATCAAAAATCGAAACAAAACAATCTCAACCTTCTTCTGAGCTATCTGGCTTAGCAAGTTCAGAGAGATCAAAGATTGAACCTTCAGAATTGCAGGCTGCTCTCCAACTACCACCTCAGACAAAAATCATTACCCAACGAATGCCTGAACCTTCCTTTTTGACATCAATCTCCTTCCGTAGTCCTGTGCAAGGTTCACCTCGCCCAATGTTAAGATATAATAGTGCACCCTCAGCTCTTGGCATTACAACTTTATTACACGATCATTCCGAAATTAATTGCAAAGAAGTCGTACATCCTGCAACGATATCTTCACCATCATCTGGCTGCATGACCACGAATGCTCTAGATTCACCTAAAGATATTCAGCCTAGTAAGCTTCCTATTTTGTCTCTCCCGCTGCCATTAGAGCCAAGCTATACATTAGAAAATTCTTCCACCACCATGTCAACTTCAACCATTCCCGATTCGTTGTCACTCCACCAACTTTCTTTAAAACCTATTAAGGCTTCAATTTCTCACTCATCTCCAATGGCATCACGAAGGAGAAGTCAAGTATCACCCTCATTACAACCAACACCTACCCCTTTTCCTGGGGTGTCTCCACCCTCTTTCGGTGAAAGCTTACATTCAATATCCTCTTCTTCTCCTTTATTAAGACCATCTCTATCTTCTGATACGAAGGAACCATCTTCCATTTCCCCTCCTCCCCTCTCTCATCTGGTTTCACCTTCATTTTTAGTAGCATCTCCATCTTCTAATAGGACAAATGGCTCAATTTCCCCATCTCCACCACAACCTTCTTTTAAAACACTATTATTATCCTCTACAAAGACAACTTCATTGGATGATCGTGTGGTTTTTTCTCAGTCACCTAAAAAGAATTTGGTGATCGCGCCTCCCTCTCCTTCACCACCATCTCCTGCTCCATGTTCTAGCCCTAAACCTTCAACCCCACCCTTGCTCCCGTCTTCTTTGATTTCGACATCTACTTGTGGTTCTAGTATCACATTTTCAGGGTCGGTGCCACCACCTCCTCTTCCTCCCAGTCTTGCACCTCAGGATTCTACCATTGTAGTTAAGAACTTGGCAGTTGTACCTGGCCCTCCAACTCCCCCACCTCCACCCTCTCTTAGTTCTTCTCTAGGTCCTACTATTGTATCTTTAGTGCCTTCTCCTCCTCCTCCTCCTCCTAATGTTTCTGCAACAACCCAAGTCTCCGGTCCCCCTCCCCCTCCCCCTCCACCTTTTGCAAATTCTGGGTCTACCCCATGTCCAAGTGTTGTAACGTCAGCTCCACCGGCTCCACCTCCTCCAGGATTTTCAATTAAGGGTTCAACAACACATGCTCCACCTGGACCACCTTCTGCCCCTGTGCCACCTTCTGCACCTGTGCCACCTTCTGCTCCTGGACCACCTTCTGCTCCTGGACCACCTTCCGTTCCTGGACCACCTTCTATTCCTGGTTTATTCGGTGGAAAGGGACGAGCCATCGGACGTTTGAACCCTAAAAACCTATCTCAACCTAAAAAGTCCAATTTGAAGCCTTATCACTGGTTAAAATTAACAAGGGCCATGCAAGGAAGCTTATGGGCAGAGACACAAAAGGCAGATGAAGCTTGCAAAGCTCCGGAGTTTGACATGTCCGAACTTGAAAGTCTTTTCTCTGCATCTGCACCGAATTCAGATGCGGGACCTGGTGGAAATTCAAATCGTCGTGCCTCAGGGCCAAAGACGGAAAAAGTTAATTTGATCGAACTTCGTCGGGCCTATAATTGCGAAATTATGCTCTCGAAAGTTAAGATTCCTTTGCCCGATATGATGTGCTCAGTCCTTGCATTGGATGAGTCGGCATTAGATGTGGATCAGGTTGAGAACCTAATCAAATTTTGTCCAACAAAGGAAGAAATGGAATTACTTAAGGGGTACACTGGAGACCATGACAACTTGGGAAAATGCGAACAATTCTTCTTAGAATTGATGAAAGTCCCACGAGTTGAATCCAAGCTAAGGGTTTTTTCTTTCAAGATACAGTTTCATATGCAGGTCTTTGAACTTAGAAATAGTCTGAATACTGTCAATTCGGCATCTGATGAGATCAGAGGTTCGACAAAGTTGAAAAGGGTAATGCAAACAATCCTTTCGTTGGGCAATGCGTTGAACCACGGAACGGCTAGAGTTGGCAGTGCTGTAAGTTGGTGGCGCTTTTCCTAG | 3540 | 43.67 | MALFRKFFYRKPPDGLLEISERVYVFDCCFTTEVLEEDEYKVYIGGIAAQLRDTLTDSSFMVFNFREGEGPSLVTNILSMYDMTVMDYPRQYEGCPLLTMEMLHHYLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLTYRRQYAGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYLSRRNVGSQWPPLDRALTLECIIIRSIPNMDGEGGCRPIFRIYGQDPFMAADRTSKVLFSTPKRSKLVRQYKQVDCELVKIDINCHIQSDVVLECISLDNDLEREEMMFRVMFNTTFIRSNILMLNRDDIDILWHGKDKFPKDFRVEVLFSEMDTTASLISVEFPNIEEKDGLPIEAFARVQEMFSNVDWLSPKADAALNMLQKITATNFLQEKRASLGSFDQLLSFGSFDKNQLLDLSFEKLLSEAETYEDNISSPRSKIETKQSQPSSELSGLASSERSKIEPSELQAALQLPPQTKIITQRMPEPSFLTSISFRSPVQGSPRPMLRYNSAPSALGITTLLHDHSEINCKEVVHPATISSPSSGCMTTNALDSPKDIQPSKLPILSLPLPLEPSYTLENSSTTMSTSTIPDSLSLHQLSLKPIKASISHSSPMASRRRSQVSPSLQPTPTPFPGVSPPSFGESLHSISSSSPLLRPSLSSDTKEPSSISPPPLSHLVSPSFLVASPSSNRTNGSISPSPPQPSFKTLLLSSTKTTSLDDRVVFSQSPKKNLVIAPPSPSPPSPAPCSSPKPSTPPLLPSSLISTSTCGSSITFSGSVPPPPLPPSLAPQDSTIVVKNLAVVPGPPTPPPPPSLSSSLGPTIVSLVPSPPPPPPNVSATTQVSGPPPPPPPPFANSGSTPCPSVVTSAPPAPPPPGFSIKGSTTHAPPGPPSAPVPPSAPVPPSAPGPPSAPGPPSVPGPPSIPGLFGGKGRAIGRLNPKNLSQPKKSNLKPYHWLKLTRAMQGSLWAETQKADEACKAPEFDMSELESLFSASAPNSDAGPGGNSNRRASGPKTEKVNLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDESALDVDQVENLIKFCPTKEEMELLKGYTGDHDNLGKCEQFFLELMKVPRVESKLRVFSFKIQFHMQVFELRNSLNTVNSASDEIRGSTKLKRVMQTILSLGNALNHGTARVGSAVSWWRFS | 1179 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 31268078 | 31276226 | - | Sed0026649.4 | Sed05g1743 | 714369 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g1743 | 1179 | MobiDBLite | consensus disorder prediction | 444 | 465 | - | - | |
Sed05g1743 | 1179 | ProSiteProfiles | C2 tensin-type domain profile. | 199 | 338 | IPR014020 | - | |
Sed05g1743 | 1179 | PANTHER | FORMIN-J | 1 | 1173 | IPR051144 | - | |
Sed05g1743 | 1179 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 13 | 187 | IPR029021 | - | |
Sed05g1743 | 1179 | Pfam | C2 domain of PTEN tumour-suppressor protein | 199 | 337 | IPR014020 | - | |
Sed05g1743 | 1179 | MobiDBLite | consensus disorder prediction | 893 | 928 | - | - | |
Sed05g1743 | 1179 | Pfam | Formin Homology 2 Domain | 950 | 1172 | IPR015425 | - | |
Sed05g1743 | 1179 | MobiDBLite | consensus disorder prediction | 613 | 632 | - | - | |
Sed05g1743 | 1179 | MobiDBLite | consensus disorder prediction | 808 | 822 | - | - | |
Sed05g1743 | 1179 | MobiDBLite | consensus disorder prediction | 648 | 712 | - | - | |
Sed05g1743 | 1179 | MobiDBLite | consensus disorder prediction | 734 | 954 | - | - | |
Sed05g1743 | 1179 | MobiDBLite | consensus disorder prediction | 830 | 863 | - | - | |
Sed05g1743 | 1179 | SMART | PTEN_C2_2 | 197 | 337 | IPR014020 | - | |
Sed05g1743 | 1179 | Gene3D | Protein tyrosine phosphatase superfamily | 14 | 191 | IPR029021 | - | |
Sed05g1743 | 1179 | MobiDBLite | consensus disorder prediction | 999 | 1019 | - | - | |
Sed05g1743 | 1179 | Gene3D | Formin, FH2 domain | 939 | 1174 | IPR042201 | - | |
Sed05g1743 | 1179 | MobiDBLite | consensus disorder prediction | 613 | 712 | - | - | |
Sed05g1743 | 1179 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 1022 | 1172 | - | - | |
Sed05g1743 | 1179 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 201 | 338 | IPR035892 | - | |
Sed05g1743 | 1179 | MobiDBLite | consensus disorder prediction | 764 | 782 | - | - | |
Sed05g1743 | 1179 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 945 | 1179 | IPR015425 | - | |
Sed05g1743 | 1179 | MobiDBLite | consensus disorder prediction | 439 | 465 | - | - | |
Sed05g1743 | 1179 | Gene3D | - | 196 | 341 | - | - | |
Sed05g1743 | 1179 | MobiDBLite | consensus disorder prediction | 740 | 763 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1741 | Sed-Chr5:31263875 | Sed05g1743 | Sed-Chr5:31268078 | 0.00E+00 | dispersed | |
Sed05g1743 | Sed-Chr5:31268078 | Sed13g1968 | Sed-Chr13:24532389 | 0.00E+00 | dispersed | |
Sed05g1742 | Sed-Chr5:31263875 | Sed05g1743 | Sed-Chr5:31268078 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g1743 | K28090 | - | csv:101214019 | 1471.83 |