Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1743 ATGGCGTTATTTCGCAAGTTCTTTTATCGGAAGCCACCCGACGGGCTTTTAGAGATATCCGAAAGGGTTTATGTTTTCGACTGCTGCTTTACAACGGAGGTCTTGGAAGAAGACGAATACAAAGTCTATATTGGAGGCATCGCGGCACAACTTCGTGATACTCTCACCGATTCTTCATTCATGGTGTTCAATTTCCGAGAGGGGGAGGGTCCAAGCCTGGTTACTAATATATTATCTATGTATGATATGACTGTAATGGACTATCCCCGACAATATGAAGGTTGCCCTCTACTCACCATGGAGATGCTCCACCACTACTTAAGATCTAGTGAAAGCTGGCTTTCGCTCGGGCAACAAAATGTACTTTTGATGCACTGTGAACGAGGGGGGTGGCCGGTCTTGGCTTTCATGTTGGCTGCTCTTTTGACTTACCGGAGGCAATATGCCGGGGAGCAGAAAACTTTGGACATGATTTACAAGCAAGCACCTCGGGAGCTTTTGCAGTTGATGTCACCTCTTAATCCATTGCCTTCACAACTGAGGTATCTTCAATATTTATCAAGAAGAAATGTGGGATCACAATGGCCTCCGCTTGACAGGGCGCTTACTCTAGAATGTATAATTATTAGATCCATTCCTAATATGGATGGGGAAGGTGGTTGCCGCCCAATATTTAGGATATATGGACAGGATCCCTTTATGGCTGCTGATCGAACTTCCAAAGTATTGTTCTCAACCCCCAAAAGGAGTAAACTTGTTCGTCAGTATAAGCAGGTAGATTGTGAACTAGTTAAAATTGATATCAATTGCCACATTCAATCTGACGTTGTTCTTGAATGTATAAGTTTGGACAATGATCTGGAAAGGGAAGAGATGATGTTTCGAGTTATGTTTAATACAACATTTATAAGGTCAAACATTTTGATGCTTAACCGTGATGACATTGATATCTTATGGCATGGAAAGGATAAATTTCCAAAAGATTTTAGAGTAGAGGTTCTTTTCTCAGAAATGGATACTACCGCATCACTTATTTCAGTTGAATTTCCAAACATTGAGGAGAAAGATGGTCTTCCAATTGAAGCATTTGCTAGAGTTCAAGAGATGTTTAGCAATGTAGACTGGCTAAGCCCAAAGGCAGATGCAGCTCTTAATATGCTTCAGAAAATAACAGCTACAAATTTTCTTCAAGAGAAACGGGCTAGTCTTGGCTCTTTCGACCAGTTGCTCAGTTTTGGCTCTTTCGACAAAAACCAGTTGCTCGATTTATCTTTTGAAAAACTACTCTCAGAAGCAGAGACATATGAAGACAATATTAGTAGTCCCCGATCAAAAATCGAAACAAAACAATCTCAACCTTCTTCTGAGCTATCTGGCTTAGCAAGTTCAGAGAGATCAAAGATTGAACCTTCAGAATTGCAGGCTGCTCTCCAACTACCACCTCAGACAAAAATCATTACCCAACGAATGCCTGAACCTTCCTTTTTGACATCAATCTCCTTCCGTAGTCCTGTGCAAGGTTCACCTCGCCCAATGTTAAGATATAATAGTGCACCCTCAGCTCTTGGCATTACAACTTTATTACACGATCATTCCGAAATTAATTGCAAAGAAGTCGTACATCCTGCAACGATATCTTCACCATCATCTGGCTGCATGACCACGAATGCTCTAGATTCACCTAAAGATATTCAGCCTAGTAAGCTTCCTATTTTGTCTCTCCCGCTGCCATTAGAGCCAAGCTATACATTAGAAAATTCTTCCACCACCATGTCAACTTCAACCATTCCCGATTCGTTGTCACTCCACCAACTTTCTTTAAAACCTATTAAGGCTTCAATTTCTCACTCATCTCCAATGGCATCACGAAGGAGAAGTCAAGTATCACCCTCATTACAACCAACACCTACCCCTTTTCCTGGGGTGTCTCCACCCTCTTTCGGTGAAAGCTTACATTCAATATCCTCTTCTTCTCCTTTATTAAGACCATCTCTATCTTCTGATACGAAGGAACCATCTTCCATTTCCCCTCCTCCCCTCTCTCATCTGGTTTCACCTTCATTTTTAGTAGCATCTCCATCTTCTAATAGGACAAATGGCTCAATTTCCCCATCTCCACCACAACCTTCTTTTAAAACACTATTATTATCCTCTACAAAGACAACTTCATTGGATGATCGTGTGGTTTTTTCTCAGTCACCTAAAAAGAATTTGGTGATCGCGCCTCCCTCTCCTTCACCACCATCTCCTGCTCCATGTTCTAGCCCTAAACCTTCAACCCCACCCTTGCTCCCGTCTTCTTTGATTTCGACATCTACTTGTGGTTCTAGTATCACATTTTCAGGGTCGGTGCCACCACCTCCTCTTCCTCCCAGTCTTGCACCTCAGGATTCTACCATTGTAGTTAAGAACTTGGCAGTTGTACCTGGCCCTCCAACTCCCCCACCTCCACCCTCTCTTAGTTCTTCTCTAGGTCCTACTATTGTATCTTTAGTGCCTTCTCCTCCTCCTCCTCCTCCTAATGTTTCTGCAACAACCCAAGTCTCCGGTCCCCCTCCCCCTCCCCCTCCACCTTTTGCAAATTCTGGGTCTACCCCATGTCCAAGTGTTGTAACGTCAGCTCCACCGGCTCCACCTCCTCCAGGATTTTCAATTAAGGGTTCAACAACACATGCTCCACCTGGACCACCTTCTGCCCCTGTGCCACCTTCTGCACCTGTGCCACCTTCTGCTCCTGGACCACCTTCTGCTCCTGGACCACCTTCCGTTCCTGGACCACCTTCTATTCCTGGTTTATTCGGTGGAAAGGGACGAGCCATCGGACGTTTGAACCCTAAAAACCTATCTCAACCTAAAAAGTCCAATTTGAAGCCTTATCACTGGTTAAAATTAACAAGGGCCATGCAAGGAAGCTTATGGGCAGAGACACAAAAGGCAGATGAAGCTTGCAAAGCTCCGGAGTTTGACATGTCCGAACTTGAAAGTCTTTTCTCTGCATCTGCACCGAATTCAGATGCGGGACCTGGTGGAAATTCAAATCGTCGTGCCTCAGGGCCAAAGACGGAAAAAGTTAATTTGATCGAACTTCGTCGGGCCTATAATTGCGAAATTATGCTCTCGAAAGTTAAGATTCCTTTGCCCGATATGATGTGCTCAGTCCTTGCATTGGATGAGTCGGCATTAGATGTGGATCAGGTTGAGAACCTAATCAAATTTTGTCCAACAAAGGAAGAAATGGAATTACTTAAGGGGTACACTGGAGACCATGACAACTTGGGAAAATGCGAACAATTCTTCTTAGAATTGATGAAAGTCCCACGAGTTGAATCCAAGCTAAGGGTTTTTTCTTTCAAGATACAGTTTCATATGCAGGTCTTTGAACTTAGAAATAGTCTGAATACTGTCAATTCGGCATCTGATGAGATCAGAGGTTCGACAAAGTTGAAAAGGGTAATGCAAACAATCCTTTCGTTGGGCAATGCGTTGAACCACGGAACGGCTAGAGTTGGCAGTGCTGTAAGTTGGTGGCGCTTTTCCTAG 3540 43.67 MALFRKFFYRKPPDGLLEISERVYVFDCCFTTEVLEEDEYKVYIGGIAAQLRDTLTDSSFMVFNFREGEGPSLVTNILSMYDMTVMDYPRQYEGCPLLTMEMLHHYLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLTYRRQYAGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYLSRRNVGSQWPPLDRALTLECIIIRSIPNMDGEGGCRPIFRIYGQDPFMAADRTSKVLFSTPKRSKLVRQYKQVDCELVKIDINCHIQSDVVLECISLDNDLEREEMMFRVMFNTTFIRSNILMLNRDDIDILWHGKDKFPKDFRVEVLFSEMDTTASLISVEFPNIEEKDGLPIEAFARVQEMFSNVDWLSPKADAALNMLQKITATNFLQEKRASLGSFDQLLSFGSFDKNQLLDLSFEKLLSEAETYEDNISSPRSKIETKQSQPSSELSGLASSERSKIEPSELQAALQLPPQTKIITQRMPEPSFLTSISFRSPVQGSPRPMLRYNSAPSALGITTLLHDHSEINCKEVVHPATISSPSSGCMTTNALDSPKDIQPSKLPILSLPLPLEPSYTLENSSTTMSTSTIPDSLSLHQLSLKPIKASISHSSPMASRRRSQVSPSLQPTPTPFPGVSPPSFGESLHSISSSSPLLRPSLSSDTKEPSSISPPPLSHLVSPSFLVASPSSNRTNGSISPSPPQPSFKTLLLSSTKTTSLDDRVVFSQSPKKNLVIAPPSPSPPSPAPCSSPKPSTPPLLPSSLISTSTCGSSITFSGSVPPPPLPPSLAPQDSTIVVKNLAVVPGPPTPPPPPSLSSSLGPTIVSLVPSPPPPPPNVSATTQVSGPPPPPPPPFANSGSTPCPSVVTSAPPAPPPPGFSIKGSTTHAPPGPPSAPVPPSAPVPPSAPGPPSAPGPPSVPGPPSIPGLFGGKGRAIGRLNPKNLSQPKKSNLKPYHWLKLTRAMQGSLWAETQKADEACKAPEFDMSELESLFSASAPNSDAGPGGNSNRRASGPKTEKVNLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDESALDVDQVENLIKFCPTKEEMELLKGYTGDHDNLGKCEQFFLELMKVPRVESKLRVFSFKIQFHMQVFELRNSLNTVNSASDEIRGSTKLKRVMQTILSLGNALNHGTARVGSAVSWWRFS 1179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31268078 31276226 - Sed0026649.4 Sed05g1743 714369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1743 1179 MobiDBLite consensus disorder prediction 444 465 - -
Sed05g1743 1179 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Sed05g1743 1179 PANTHER FORMIN-J 1 1173 IPR051144 -
Sed05g1743 1179 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 187 IPR029021 -
Sed05g1743 1179 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Sed05g1743 1179 MobiDBLite consensus disorder prediction 893 928 - -
Sed05g1743 1179 Pfam Formin Homology 2 Domain 950 1172 IPR015425 -
Sed05g1743 1179 MobiDBLite consensus disorder prediction 613 632 - -
Sed05g1743 1179 MobiDBLite consensus disorder prediction 808 822 - -
Sed05g1743 1179 MobiDBLite consensus disorder prediction 648 712 - -
Sed05g1743 1179 MobiDBLite consensus disorder prediction 734 954 - -
Sed05g1743 1179 MobiDBLite consensus disorder prediction 830 863 - -
Sed05g1743 1179 SMART PTEN_C2_2 197 337 IPR014020 -
Sed05g1743 1179 Gene3D Protein tyrosine phosphatase superfamily 14 191 IPR029021 -
Sed05g1743 1179 MobiDBLite consensus disorder prediction 999 1019 - -
Sed05g1743 1179 Gene3D Formin, FH2 domain 939 1174 IPR042201 -
Sed05g1743 1179 MobiDBLite consensus disorder prediction 613 712 - -
Sed05g1743 1179 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1022 1172 - -
Sed05g1743 1179 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Sed05g1743 1179 MobiDBLite consensus disorder prediction 764 782 - -
Sed05g1743 1179 ProSiteProfiles Formin homology-2 (FH2) domain profile. 945 1179 IPR015425 -
Sed05g1743 1179 MobiDBLite consensus disorder prediction 439 465 - -
Sed05g1743 1179 Gene3D - 196 341 - -
Sed05g1743 1179 MobiDBLite consensus disorder prediction 740 763 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1741 Sed-Chr5:31263875 Sed05g1743 Sed-Chr5:31268078 0.00E+00 dispersed
Sed05g1743 Sed-Chr5:31268078 Sed13g1968 Sed-Chr13:24532389 0.00E+00 dispersed
Sed05g1742 Sed-Chr5:31263875 Sed05g1743 Sed-Chr5:31268078 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1743 K28090 - csv:101214019 1471.83