Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g1753 | ATGCAGGCAGATCAGGCGGCGATCAGTCTCAGACCAGGCGGCGGCGGCGGCTTTCGTGGATCCCGATTCGCTACTCCCCGCTTCGATTCTTCCTCCCTTCGTTCTCATGCCGCCCTTGCGTCCATCCTCAAGACTGGAGATCTACGGTTTGAGGGCCATGAGCGAGTCAAGTACACTCGAGACCAGCTTTTGCAGCTTAGAGAGGTTAAAACAGTCCCTGAGATTATCTTGAAGGTCAAAATAGAAGTCGAAACTGAGATTGCTGGGGAGGATCAAACATGGGCTCGTGCTGAAACCATTCAGCAATCACAATCTCAAGGCCGTCACTTTGAGCCTGACAATCGAGATTGGCGTGGTCGATCCGGACAAGTACCTACCTCTGCAGAAGAAGGATCTTGGGAGGATAAGAATTTATTAGGACAATCCGACTCAAATAATAGGACCCAAGTTTCTGGTAACCAAGGGGTTGTTGTTGCACCTGCCCTCATCAAGGCTGAAGTTCCTTGGTCAGTTAGAAGAGGTAATATCTCAGAAAAGGAACGTGTTTTGAAGACAGTTAAAGGAATACTTAACAAATTGACTCCAGAAAAGTTTGACTTGCTCAAGGGTCAACTGATTGACTCTGGGATTGTTTCCGCTGATATTTTGAAGGATGTTATATCACTTATATTTGAGAAGGCCGTGTTTGAGCCCACATTTTGCCCTATGTATGCACTTTTGTGCTTTGACCTTAATGAGAAGCTTCCTTCATTTCCATCCGAAGTCCCTGGAGAGAAAGACATCACTTTTAGACGAGCTCTCTTAGATATTTGCCAATCGGCATTTGAAGGTGCTGAGCACTTAAGGGCAGAAATTGGGTGGTTGACTAATCCCGAGCATGAAATGGAAAGAGGAGATAAAGAAAAAATGGTTAAGCTTCGAACTCTAGGAAACATTCGCCTGATAGGTGAGCTTCTTAAACAGAAGATGGTTACTGAAAGGATTGTTCACCATATTGTTCTGGAGCTTTTGGGGTCGGATGTACAAGCATGCCCTGCCGAGGAGAATGTTGAGGCTATTTGTCAGTTCTTCAACACAATTGGTAAGCAGCTGGATGAGAACAAAAAATCTCGGCAGGTCAATGATGTATACTTCTCCCGGATGAAGGAGCTCACTGCAAACACCCAACTAGCACCTAGGTTGAGATTTATGGTCCGTGATGTTCTTGATTTACGGGCTAATAAATGGGTTCCTAGGCGTGAAGAGGTGAAAGCAAAAACCATCACTGAAATTCATTCAGAAGCTGAGAAGAATCTAGGGCTTCGTCCTGGTTCAATGGCGATGATGAGAAATGGCCGTAATGCCGAGGCCCTTGGTGGGCCTGTTGCTCGACCTGGCTTTGGGGGTATGATGCCTGGAATGCCTCCTGGAACCAGGAAAATGCCTGGTATGCCTGGACTTGATTCGGACAATTGGGAGGTTCCTAGATCTCGATCAATGCCAAGGGGCGAAAGCGGGGCTTCTGCTCGTACACCATTAACCGGCAGAACATCTTCCATTAGTTCGAAATATCTACCTCAGGGAAGTGGTGGTGTAATAATAGGGAAAACAAGTGCCTTGTTACAGGGTAGTGCTACCGCTCCTGTCCGAACGCAGCCTGTCTCTCACAACCCTAGACCGGTTGCTCCGGTTGCCTCTGCCATACCCTCTCCTCAGAAGCCAATAGCTCCTGCTGTAGTATCCAATTCAGCTGATCTTCACAAGAAAACTGTTTCCCTGCTCGAGGAATACTTCAGTGTACGGATTCTCGATGAAGCTCTGCAGTGTGTAGAGGAGCTGAAATCCCCAGCTTATCACCCTGAGGTTGTTAAAGAATCTCTTGCCATAGCACTTGAAAAGATTCCACCATGTGTAGACCCAGTTGTCAAGCTTCTGGAGCACCTCCTTCGCAAGAATGTCTTAACTGCAAGGGATATCGGTACCGGGTGCCTTCTATATGGGTCGATGATGGATGATATCAGCATTGATCTACCAAAAGCGCCAAACAATTTCGGTGAGATCCTTGGAAAGTTGATATTGATCGGTGGTGTGGATTTCGTAGTCGTAAACGAGATCCTCAAGAAGCTCGAAGATGACTATTACCAAAAGGCCATTTTTGGTGGTGCTATGAAGAGCCTCAACTCTAGCCCTTCTGGACAAGGAATTCTGGCCACTCAAAGCGTCGAGATCCAGGCATGTGAGAATTTACTTGCGTAA | 2235 | 46.89 | MQADQAAISLRPGGGGGFRGSRFATPRFDSSSLRSHAALASILKTGDLRFEGHERVKYTRDQLLQLREVKTVPEIILKVKIEVETEIAGEDQTWARAETIQQSQSQGRHFEPDNRDWRGRSGQVPTSAEEGSWEDKNLLGQSDSNNRTQVSGNQGVVVAPALIKAEVPWSVRRGNISEKERVLKTVKGILNKLTPEKFDLLKGQLIDSGIVSADILKDVISLIFEKAVFEPTFCPMYALLCFDLNEKLPSFPSEVPGEKDITFRRALLDICQSAFEGAEHLRAEIGWLTNPEHEMERGDKEKMVKLRTLGNIRLIGELLKQKMVTERIVHHIVLELLGSDVQACPAEENVEAICQFFNTIGKQLDENKKSRQVNDVYFSRMKELTANTQLAPRLRFMVRDVLDLRANKWVPRREEVKAKTITEIHSEAEKNLGLRPGSMAMMRNGRNAEALGGPVARPGFGGMMPGMPPGTRKMPGMPGLDSDNWEVPRSRSMPRGESGASARTPLTGRTSSISSKYLPQGSGGVIIGKTSALLQGSATAPVRTQPVSHNPRPVAPVASAIPSPQKPIAPAVVSNSADLHKKTVSLLEEYFSVRILDEALQCVEELKSPAYHPEVVKESLAIALEKIPPCVDPVVKLLEHLLRKNVLTARDIGTGCLLYGSMMDDISIDLPKAPNNFGEILGKLILIGGVDFVVVNEILKKLEDDYYQKAIFGGAMKSLNSSPSGQGILATQSVEIQACENLLA | 744 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 31346957 | 31353834 | - | Sed0002231.1 | Sed05g1753 | 714379 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g1753 | 744 | Pfam | MIF4G domain | 183 | 408 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Sed05g1753 | 744 | SUPERFAMILY | ARM repeat | 176 | 411 | IPR016024 | - | |
Sed05g1753 | 744 | Gene3D | - | 574 | 732 | - | - | |
Sed05g1753 | 744 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA | 45 | 741 | IPR045208 | GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER) | |
Sed05g1753 | 744 | MobiDBLite | consensus disorder prediction | 137 | 151 | - | - | |
Sed05g1753 | 744 | MobiDBLite | consensus disorder prediction | 503 | 517 | - | - | |
Sed05g1753 | 744 | SUPERFAMILY | ARM repeat | 576 | 730 | IPR016024 | - | |
Sed05g1753 | 744 | MobiDBLite | consensus disorder prediction | 488 | 517 | - | - | |
Sed05g1753 | 744 | SMART | if4_15 | 183 | 408 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Sed05g1753 | 744 | Gene3D | - | 174 | 409 | - | - | |
Sed05g1753 | 744 | MobiDBLite | consensus disorder prediction | 99 | 151 | - | - | |
Sed05g1753 | 744 | ProSiteProfiles | MI domain profile. | 578 | 700 | IPR003891 | - | |
Sed05g1753 | 744 | Pfam | MA3 domain | 580 | 688 | IPR003891 | - | |
Sed05g1753 | 744 | SMART | ma3_7 | 579 | 691 | IPR003891 | - | |
Sed05g1753 | 744 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Sed05g1753 | 744 | FunFam | Eukaryotic translation initiation factor isoform 4G-2 | 174 | 409 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1753 | Sed-Chr5:31346957 | Sed12g2281 | Sed-Chr12:33023449 | 2.20E-245 | dispersed | |
Sed05g1753 | Sed-Chr5:31346957 | Sed05g1754 | Sed-Chr5:31346957 | 0.00E+00 | tandem | |
Sed13g1954 | Sed-Chr13:24441564 | Sed05g1753 | Sed-Chr5:31346957 | 0.00E+00 | wgd | |
Sed05g1753 | Sed-Chr5:31346957 | Sed08g0571 | Sed-Chr8:3867217 | 5.30E-252 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g1753 | K03260 | - | csv:101211356 | 1129.01 |