Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1753 ATGCAGGCAGATCAGGCGGCGATCAGTCTCAGACCAGGCGGCGGCGGCGGCTTTCGTGGATCCCGATTCGCTACTCCCCGCTTCGATTCTTCCTCCCTTCGTTCTCATGCCGCCCTTGCGTCCATCCTCAAGACTGGAGATCTACGGTTTGAGGGCCATGAGCGAGTCAAGTACACTCGAGACCAGCTTTTGCAGCTTAGAGAGGTTAAAACAGTCCCTGAGATTATCTTGAAGGTCAAAATAGAAGTCGAAACTGAGATTGCTGGGGAGGATCAAACATGGGCTCGTGCTGAAACCATTCAGCAATCACAATCTCAAGGCCGTCACTTTGAGCCTGACAATCGAGATTGGCGTGGTCGATCCGGACAAGTACCTACCTCTGCAGAAGAAGGATCTTGGGAGGATAAGAATTTATTAGGACAATCCGACTCAAATAATAGGACCCAAGTTTCTGGTAACCAAGGGGTTGTTGTTGCACCTGCCCTCATCAAGGCTGAAGTTCCTTGGTCAGTTAGAAGAGGTAATATCTCAGAAAAGGAACGTGTTTTGAAGACAGTTAAAGGAATACTTAACAAATTGACTCCAGAAAAGTTTGACTTGCTCAAGGGTCAACTGATTGACTCTGGGATTGTTTCCGCTGATATTTTGAAGGATGTTATATCACTTATATTTGAGAAGGCCGTGTTTGAGCCCACATTTTGCCCTATGTATGCACTTTTGTGCTTTGACCTTAATGAGAAGCTTCCTTCATTTCCATCCGAAGTCCCTGGAGAGAAAGACATCACTTTTAGACGAGCTCTCTTAGATATTTGCCAATCGGCATTTGAAGGTGCTGAGCACTTAAGGGCAGAAATTGGGTGGTTGACTAATCCCGAGCATGAAATGGAAAGAGGAGATAAAGAAAAAATGGTTAAGCTTCGAACTCTAGGAAACATTCGCCTGATAGGTGAGCTTCTTAAACAGAAGATGGTTACTGAAAGGATTGTTCACCATATTGTTCTGGAGCTTTTGGGGTCGGATGTACAAGCATGCCCTGCCGAGGAGAATGTTGAGGCTATTTGTCAGTTCTTCAACACAATTGGTAAGCAGCTGGATGAGAACAAAAAATCTCGGCAGGTCAATGATGTATACTTCTCCCGGATGAAGGAGCTCACTGCAAACACCCAACTAGCACCTAGGTTGAGATTTATGGTCCGTGATGTTCTTGATTTACGGGCTAATAAATGGGTTCCTAGGCGTGAAGAGGTGAAAGCAAAAACCATCACTGAAATTCATTCAGAAGCTGAGAAGAATCTAGGGCTTCGTCCTGGTTCAATGGCGATGATGAGAAATGGCCGTAATGCCGAGGCCCTTGGTGGGCCTGTTGCTCGACCTGGCTTTGGGGGTATGATGCCTGGAATGCCTCCTGGAACCAGGAAAATGCCTGGTATGCCTGGACTTGATTCGGACAATTGGGAGGTTCCTAGATCTCGATCAATGCCAAGGGGCGAAAGCGGGGCTTCTGCTCGTACACCATTAACCGGCAGAACATCTTCCATTAGTTCGAAATATCTACCTCAGGGAAGTGGTGGTGTAATAATAGGGAAAACAAGTGCCTTGTTACAGGGTAGTGCTACCGCTCCTGTCCGAACGCAGCCTGTCTCTCACAACCCTAGACCGGTTGCTCCGGTTGCCTCTGCCATACCCTCTCCTCAGAAGCCAATAGCTCCTGCTGTAGTATCCAATTCAGCTGATCTTCACAAGAAAACTGTTTCCCTGCTCGAGGAATACTTCAGTGTACGGATTCTCGATGAAGCTCTGCAGTGTGTAGAGGAGCTGAAATCCCCAGCTTATCACCCTGAGGTTGTTAAAGAATCTCTTGCCATAGCACTTGAAAAGATTCCACCATGTGTAGACCCAGTTGTCAAGCTTCTGGAGCACCTCCTTCGCAAGAATGTCTTAACTGCAAGGGATATCGGTACCGGGTGCCTTCTATATGGGTCGATGATGGATGATATCAGCATTGATCTACCAAAAGCGCCAAACAATTTCGGTGAGATCCTTGGAAAGTTGATATTGATCGGTGGTGTGGATTTCGTAGTCGTAAACGAGATCCTCAAGAAGCTCGAAGATGACTATTACCAAAAGGCCATTTTTGGTGGTGCTATGAAGAGCCTCAACTCTAGCCCTTCTGGACAAGGAATTCTGGCCACTCAAAGCGTCGAGATCCAGGCATGTGAGAATTTACTTGCGTAA 2235 46.89 MQADQAAISLRPGGGGGFRGSRFATPRFDSSSLRSHAALASILKTGDLRFEGHERVKYTRDQLLQLREVKTVPEIILKVKIEVETEIAGEDQTWARAETIQQSQSQGRHFEPDNRDWRGRSGQVPTSAEEGSWEDKNLLGQSDSNNRTQVSGNQGVVVAPALIKAEVPWSVRRGNISEKERVLKTVKGILNKLTPEKFDLLKGQLIDSGIVSADILKDVISLIFEKAVFEPTFCPMYALLCFDLNEKLPSFPSEVPGEKDITFRRALLDICQSAFEGAEHLRAEIGWLTNPEHEMERGDKEKMVKLRTLGNIRLIGELLKQKMVTERIVHHIVLELLGSDVQACPAEENVEAICQFFNTIGKQLDENKKSRQVNDVYFSRMKELTANTQLAPRLRFMVRDVLDLRANKWVPRREEVKAKTITEIHSEAEKNLGLRPGSMAMMRNGRNAEALGGPVARPGFGGMMPGMPPGTRKMPGMPGLDSDNWEVPRSRSMPRGESGASARTPLTGRTSSISSKYLPQGSGGVIIGKTSALLQGSATAPVRTQPVSHNPRPVAPVASAIPSPQKPIAPAVVSNSADLHKKTVSLLEEYFSVRILDEALQCVEELKSPAYHPEVVKESLAIALEKIPPCVDPVVKLLEHLLRKNVLTARDIGTGCLLYGSMMDDISIDLPKAPNNFGEILGKLILIGGVDFVVVNEILKKLEDDYYQKAIFGGAMKSLNSSPSGQGILATQSVEIQACENLLA 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31346957 31353834 - Sed0002231.1 Sed05g1753 714379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1753 744 Pfam MIF4G domain 183 408 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed05g1753 744 SUPERFAMILY ARM repeat 176 411 IPR016024 -
Sed05g1753 744 Gene3D - 574 732 - -
Sed05g1753 744 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 45 741 IPR045208 GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER)
Sed05g1753 744 MobiDBLite consensus disorder prediction 137 151 - -
Sed05g1753 744 MobiDBLite consensus disorder prediction 503 517 - -
Sed05g1753 744 SUPERFAMILY ARM repeat 576 730 IPR016024 -
Sed05g1753 744 MobiDBLite consensus disorder prediction 488 517 - -
Sed05g1753 744 SMART if4_15 183 408 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed05g1753 744 Gene3D - 174 409 - -
Sed05g1753 744 MobiDBLite consensus disorder prediction 99 151 - -
Sed05g1753 744 ProSiteProfiles MI domain profile. 578 700 IPR003891 -
Sed05g1753 744 Pfam MA3 domain 580 688 IPR003891 -
Sed05g1753 744 SMART ma3_7 579 691 IPR003891 -
Sed05g1753 744 MobiDBLite consensus disorder prediction 1 23 - -
Sed05g1753 744 FunFam Eukaryotic translation initiation factor isoform 4G-2 174 409 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1753 Sed-Chr5:31346957 Sed12g2281 Sed-Chr12:33023449 2.20E-245 dispersed
Sed05g1753 Sed-Chr5:31346957 Sed05g1754 Sed-Chr5:31346957 0.00E+00 tandem
Sed13g1954 Sed-Chr13:24441564 Sed05g1753 Sed-Chr5:31346957 0.00E+00 wgd
Sed05g1753 Sed-Chr5:31346957 Sed08g0571 Sed-Chr8:3867217 5.30E-252 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1753 K03260 - csv:101211356 1129.01