Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1754 ATGCAGGCAGATCAGGCGGCGATCAGTCTCAGACCAGGCGGCGGCGGCGGCTTTCGTGGATCCCGATTCGCTACTCCCCGCTTCGATTCTTCCTCCCTTCGTTCTCATGCCGCCCTTGCGTCCATCCTCAAGACTGGAGATCTACGGTTTGAGGGCCATGAGCGAGTCAAGTACACTCGAGACCAGCTTTTGCAGCTTAGAGAGGTTAAAACAGTCCCTGAGATTATCTTGAAGGTCAAAATAGAAGTCGAAACTGAGATTGCTGGGGAGGATCAAACATGGGCTCGTGCTGAAACCATTCAATCACAATCTCAAGGCCGTCACTTTGAGCCTGACAATCGAGATTGGCGTGGTCGATCCGGACAAGTACCTACCTCTGCAGAAGAAGGATCTTGGGAGGATAAGAATTTATTAGGACAATCCGACTCAAATAATAGGACCCAAGTTTCTGGTAACCAAGGGGTTGTTGTTGCACCTGCCCTCATCAAGGCTGAAGTTCCTTGGTCAGTTAGAAGAGGTAATATCTCAGAAAAGGAACGTGTTTTGAAGACAGTTAAAGGAATACTTAACAAATTGACTCCAGAAAAGTTTGACTTGCTCAAGGGTCAACTGATTGACTCTGGGATTGTTTCCGCTGATATTTTGAAGGATGTTATATCACTTATATTTGAGAAGGCCGTGTTTGAGCCCACATTTTGCCCTATGTATGCACTTTTGTGCTTTGACCTTAATGAGAAGCTTCCTTCATTTCCATCCGAAGTCCCTGGAGAGAAAGACATCACTTTTAGACGAGCTCTCTTAGATATTTGCCAATCGGCATTTGAAGGTGCTGAGCACTTAAGGGCAGAAATTGGGTGGTTGACTAATCCCGAGCATGAAATGGAAAGAGGAGATAAAGAAAAAATGGTTAAGCTTCGAACTCTAGGAAACATTCGCCTGATAGGTGAGCTTCTTAAACAGAAGATGGTTACTGAAAGGATTGTTCACCATATTGTTCTGGAGCTTTTGGGGTCGGATGTACAAGCATGCCCTGCCGAGGAGAATGTTGAGGCTATTTGTCAGTTCTTCAACACAATTGGTAAGCAGCTGGATGAGAACAAAAAATCTCGGCAGGTCAATGATGTATACTTCTCCCGGATGAAGGAGCTCACTGCAAACACCCAACTAGCACCTAGGTTGAGATTTATGGTCCGTGATGTTCTTGATTTACGGGCTAATAAATGGGTTCCTAGGCGTGAAGAGGTGAAAGCAAAAACCATCACTGAAATTCATTCAGAAGCTGAGAAGAATCTAGGGCTTCGTCCTGGTTCAATGGCGATGATGAGAAATGGCCGTAATGCCGAGGCCCTTGGTGGGCCTGTTGCTCGACCTGGCTTTGGGGGTATGATGCCTGGAATGCCTCCTGGAACCAGGAAAATGCCTGGTATGCCTGGACTTGATTCGGACAATTGGGAGGTTCCTAGATCTCGATCAATGCCAAGGGGCGAAAGCGGGGCTTCTGCTCGTACACCATTAACCGGCAGAACATCTTCCATTAGTTCGAAATATCTACCTCAGGGAAGTGGTGGTGTAATAATAGGGAAAACAAGTGCCTTGTTACAGGGTAGTGCTACCGCTCCTGTCCGAACGCAGCCTGTCTCTCACAACCCTAGACCGGTTGCTCCGGTTGCCTCTGCCATACCCTCTCCTCAGAAGCCAATAGCTCCTGCTGTAGTATCCAATTCAGCTGATCTTCACAAGAAAACTGTTTCCCTGCTCGAGGAATACTTCAGTGTACGGATTCTCGATGAAGCTCTGCAGTGTGTAGAGGAGCTGAAATCCCCAGCTTATCACCCTGAGGTTGTTAAAGAATCTCTTGCCATAGCACTTGAAAAGATTCCACCATGTGTAGACCCAGTTGTCAAGCTTCTGGAGCACCTCCTTCGCAAGAATGTCTTAACTGCAAGGGATATCGGTACCGGGTGCCTTCTATATGGGTCGATGATGGATGATATCAGCATTGATCTACCAAAAGCGCCAAACAATTTCGGTGAGATCCTTGGAAAGTTGATATTGATCGGTGGTGTGGATTTCGTAGTCGTAAACGAGATCCTCAAGAAGCTCGAAGATGACTATTACCAAAAGGCCATTTTTGGTGGTGCTATGAAGAGCCTCAACTCTAGCCCTTCTGGACAAGGAATTCTGGCCACTCAAAGCGTCGAGATCCAGGCATGTGAGAATTTACTTGCGTAA 2232 46.86 MQADQAAISLRPGGGGGFRGSRFATPRFDSSSLRSHAALASILKTGDLRFEGHERVKYTRDQLLQLREVKTVPEIILKVKIEVETEIAGEDQTWARAETIQSQSQGRHFEPDNRDWRGRSGQVPTSAEEGSWEDKNLLGQSDSNNRTQVSGNQGVVVAPALIKAEVPWSVRRGNISEKERVLKTVKGILNKLTPEKFDLLKGQLIDSGIVSADILKDVISLIFEKAVFEPTFCPMYALLCFDLNEKLPSFPSEVPGEKDITFRRALLDICQSAFEGAEHLRAEIGWLTNPEHEMERGDKEKMVKLRTLGNIRLIGELLKQKMVTERIVHHIVLELLGSDVQACPAEENVEAICQFFNTIGKQLDENKKSRQVNDVYFSRMKELTANTQLAPRLRFMVRDVLDLRANKWVPRREEVKAKTITEIHSEAEKNLGLRPGSMAMMRNGRNAEALGGPVARPGFGGMMPGMPPGTRKMPGMPGLDSDNWEVPRSRSMPRGESGASARTPLTGRTSSISSKYLPQGSGGVIIGKTSALLQGSATAPVRTQPVSHNPRPVAPVASAIPSPQKPIAPAVVSNSADLHKKTVSLLEEYFSVRILDEALQCVEELKSPAYHPEVVKESLAIALEKIPPCVDPVVKLLEHLLRKNVLTARDIGTGCLLYGSMMDDISIDLPKAPNNFGEILGKLILIGGVDFVVVNEILKKLEDDYYQKAIFGGAMKSLNSSPSGQGILATQSVEIQACENLLA 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31346957 31353834 - Sed0002231.2 Sed05g1754 714380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1754 743 MobiDBLite consensus disorder prediction 136 150 - -
Sed05g1754 743 MobiDBLite consensus disorder prediction 502 516 - -
Sed05g1754 743 FunFam Eukaryotic translation initiation factor isoform 4G-2 173 408 - -
Sed05g1754 743 MobiDBLite consensus disorder prediction 487 516 - -
Sed05g1754 743 SMART ma3_7 578 690 IPR003891 -
Sed05g1754 743 MobiDBLite consensus disorder prediction 99 150 - -
Sed05g1754 743 Pfam MIF4G domain 182 407 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed05g1754 743 SUPERFAMILY ARM repeat 575 729 IPR016024 -
Sed05g1754 743 SMART if4_15 182 407 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed05g1754 743 SUPERFAMILY ARM repeat 175 410 IPR016024 -
Sed05g1754 743 Pfam MA3 domain 579 687 IPR003891 -
Sed05g1754 743 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 47 740 IPR045208 GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER)
Sed05g1754 743 Gene3D - 173 408 - -
Sed05g1754 743 MobiDBLite consensus disorder prediction 1 23 - -
Sed05g1754 743 ProSiteProfiles MI domain profile. 577 699 IPR003891 -
Sed05g1754 743 Gene3D - 573 731 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1754 Sed-Chr5:31346957 Sed13g1954 Sed-Chr13:24441564 0.00E+00 dispersed
Sed05g1753 Sed-Chr5:31346957 Sed05g1754 Sed-Chr5:31346957 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1754 K03260 - csv:101211356 1124.77