Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1778 ATGGCTTCCTTCTTTTCCCTCCCTGTTGTTGTTGTTCTTCTTCTTATGAGTTTTACCCATTGTTGGTCTCATGAATCATTAGATTTCATATCCGCCATTGGAGACCCTGGAATGAAGAACCCTAATGTTCGAGTTGGATTTGAGGCTTGGAATTTTTGTAATGAAGTTGGAGCTGAAGCTCCTCAAATGGGTAGCCCTAGATTGGCTGATTGTGCTGATTTGCAACCCCCATTGGGTGCTGATCCTTTTGTAGTCCACAAAGTTAAGGAATCTGATAATAAACTTGGGGCTGGTGAAAATTTCCCATCCAAACGTTTTCAGCCATACCAGGATCCAGATTTGTATGTGGTGGAGAAGGAGAAGTACCTTGGTTCACTCTGTGAGGTTCATGAATCTTTGAAAACGTGGTACTTCTGGATGATTATGCTAAAAAATGGGAATTTTGACAAGAACTCTACCCTGTGCCCTGAAAATGGTAAGAAGCTTAGTAAAATTACAACTGATAGAAAGTTCCCATGTTTCGGCAATGGTTGTATGAACCAGCCTCTAGTTTACCATAACTATTCAAGATTGGTGTCTTCTTCTTTAACTGGCGGCTTCTATGGAACCTATGAACTTGATGCTGATTTGAGTAATGGAATACAGAACAATTCTTATTTCTCAGTCTCCTGGCACAAGAATGTTAGTACAGGAAGTTGGATTTTTTCGAATCGATTAACCACATCTTCCAAGTATCCTTGGCTTATGCTCTACCTTCGATCTGATGCAACCAGGGGTTTCAATGGTGGATATCACTATGATGGCCGTGGGATTATGAGAAAGTTGCCTGAGTCCCCAAATTTCAAAGTGAGATTAACACTTGACATTAAAAGTGGGGGTGGAAAAAACAGCCAATTCTATCTCCTAGACATAGGAAGCTGTTGGAAGAACAATGGAGATCCTTGCGACGGCGATACTACTACCGACGTAACTCGATACAGTGAAATGATCATCAATCCTGAAACTACAAGCTGGTGCAAGCCGAACAATCTCGTGTCGTGTCCTCCCTATCATGTTACTACTTCAGGTGAGAAGATATACAGGAATGACACATCAAGGTTTCCTTATTCGGCTTATCATCTCTACTGCAGCCCTGGAAATGCTATGCATTTGGAGAAACCATATGACATTTGCGATCCATATAGCAACCCACAGTCTCAAGAGTTATTACAGATTATTCCACATCCTGAATGGGCTGTACATGGCTATCCATTGAAGCAGGGAGATGGATGGGTTGGAGATCCTAGAACTTGGGAGCTCGACGTAGGAGCTTTGTCGAGCCGTTTGTACTTCTATCAGGATCCGGGAACGAAGCCAGCGAAGCGGGTATGGACTTCGATTAATGTCGGTACAGAAATTTATGTTAGTGTTGGGGAGACAGCAGAGTGGAGTGTAAGTGACTTTGATGTTTTGGTTCCACAAGATGTTGCTAGGGAGTAG 1479 42.6 MASFFSLPVVVVLLLMSFTHCWSHESLDFISAIGDPGMKNPNVRVGFEAWNFCNEVGAEAPQMGSPRLADCADLQPPLGADPFVVHKVKESDNKLGAGENFPSKRFQPYQDPDLYVVEKEKYLGSLCEVHESLKTWYFWMIMLKNGNFDKNSTLCPENGKKLSKITTDRKFPCFGNGCMNQPLVYHNYSRLVSSSLTGGFYGTYELDADLSNGIQNNSYFSVSWHKNVSTGSWIFSNRLTTSSKYPWLMLYLRSDATRGFNGGYHYDGRGIMRKLPESPNFKVRLTLDIKSGGGKNSQFYLLDIGSCWKNNGDPCDGDTTTDVTRYSEMIINPETTSWCKPNNLVSCPPYHVTTSGEKIYRNDTSRFPYSAYHLYCSPGNAMHLEKPYDICDPYSNPQSQELLQIIPHPEWAVHGYPLKQGDGWVGDPRTWELDVGALSSRLYFYQDPGTKPAKRVWTSINVGTEIYVSVGETAEWSVSDFDVLVPQDVARE 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31420473 31423861 + Sed0014840.1 Sed05g1778 714404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1778 492 PANTHER - 10 487 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1778 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1778 Sed-Chr5:31420473 Sed09g0262 Sed-Chr9:2109592 8.20E-233 dispersed
Sed05g1777 Sed-Chr5:31420256 Sed05g1778 Sed-Chr5:31420473 3.10E-287 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1656 . . . . . . . . . . . . . . . Cpe06g01009 . . . . . . . . Cla08g00044 Cam08g0043 Cec08g0209 Cco08g0098 Clacu08g0060 Cmu08g0058 Cre08g0048 . . . . . . . Cme09g00028 . . . . . . . . Sed05g1778 . Cmo09g01306 . . . Car09g01148 . . Bhi06g00231 Tan10g2022 Cmetu09g1078 . . . . . . . . . . . Lsi08g00036 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003971 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 2 1 1 1 1 1 2 2 3 41