Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1782 ATGGCGGACGATTCAAACGACGGCGACTTCCCATTATGGCAACTCCACAAAAACTACCCTCTTTTGTTCACCGACGACATTCTCAGTTTCATGGCCCATACCAATCCCACCGCGGTCCCCGACGCTGCCGCCATAGACCCGACATTTCTTCCACCACGTTCCGCTTCCGGCCAACCCGACGTAGATTATTGGAGTTCTAATGTGGGGCCGTCTAGTAATTTTTGTTTCCTCCCCGGTGAAACTAGTACTTGTAGGGAACAGCAGCATGACAATTTTGAGATTCCGGAATATGACGGCGGCGACGGCGAAGGCGACGGCGACGGTGGTGGTTATTGTCGGCGTCTTCCGATTGCGCCTGAGACTGAGGCGTTTCAGCCTGTTGCATGTAGTTGTTGCTTGGTTCTTAGGGAGATTGTTCATAGTAATGGTATGAATACGAGGAAGCTTGAGATCCATGGAAGATTCGGAATATTGTGCCACGCAATTTTGCACGAAATTAATTCTCCTTCCCCAAATTCCTCCACCATCACCCACTACAATATGTTTGATTTGTCAAAGAAGAGTACAGAGGAAGTGAAGCGGTTTATAATGCAACACTATTTGAACCAAATGCTGGATGAGTACACAGCTCTTCCTGAACCATTGTCCGAATTTTATGATGTTTTGTGCATTGGATTAGATTGGGATGACCAAACCCAAACCCAAACCCAAACCCAGATCCAAACACCCCTCTTATCGCCTTGCGATGACTCTGCGCATCCACTCCCACTCCACCCGGTTTTAGAGGAAAATGACGAGGATGAGGAAGAAGATCAAATGCAAATGGATCAACAACTCGATCGTCCACTCGAATTAAGAGAGGGACGACGGTTTTCTCAAACACCACTTGCAAGACAGAGGCAGAGGGCGGGAAGAATGACGGTGAACGATTTGAGAGAATATCTTCACCTTCCGATCAGCGAGGCGGCGAAGAAGATGAATCTCTGTCTGACCGTCGTCAAGAAGATCTGCCGCCGGAGTGGGCTCCGCCGCTGGCCTTACAGAAAGGTGAGAAGTTATCAAAGGAAAATGGGAGCTTTGGAGACGAGATTAAGATCGAGAGATGCAGAGACGAGGGCCAGAGCTGAAGCTGAAATGGACACGCTGCGCCAACAATTGGCTCACTTATGTGCTGGAATTGTACCTGATTAA 1191 48.7 MADDSNDGDFPLWQLHKNYPLLFTDDILSFMAHTNPTAVPDAAAIDPTFLPPRSASGQPDVDYWSSNVGPSSNFCFLPGETSTCREQQHDNFEIPEYDGGDGEGDGDGGGYCRRLPIAPETEAFQPVACSCCLVLREIVHSNGMNTRKLEIHGRFGILCHAILHEINSPSPNSSTITHYNMFDLSKKSTEEVKRFIMQHYLNQMLDEYTALPEPLSEFYDVLCIGLDWDDQTQTQTQTQIQTPLLSPCDDSAHPLPLHPVLEENDEDEEEDQMQMDQQLDRPLELREGRRFSQTPLARQRQRAGRMTVNDLREYLHLPISEAAKKMNLCLTVVKKICRRSGLRRWPYRKVRSYQRKMGALETRLRSRDAETRARAEAEMDTLRQQLAHLCAGIVPD 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31450602 31453309 - Sed0013662.1 Sed05g1782 714408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1782 396 PANTHER PROTEIN RKD4 105 378 IPR044607 GO:0003700(InterPro)
Sed05g1782 396 ProSiteProfiles RWP-RK domain profile. 293 373 IPR003035 -
Sed05g1782 396 MobiDBLite consensus disorder prediction 275 293 - -
Sed05g1782 396 MobiDBLite consensus disorder prediction 264 303 - -
Sed05g1782 396 Coils Coil 365 385 - -
Sed05g1782 396 Pfam RWP-RK domain 306 352 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1782 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1782 Sed-Chr5:31450602 Sed11g0864 Sed-Chr11:20758648 2.30E-60 dispersed
Sed05g1782 Sed-Chr5:31450602 Sed08g0215 Sed-Chr8:1257342 7.80E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1032 . . . . . . . . . . . . . . Sed05g1782 . . Bhi01g01498 Tan01g0086 Cmetu03g1368 . Hepe07g0054 Mch10g0052 . . . . . . . . . . Cone14ag0006 . . . . Cme06g01149 . . . . . Bpe12g00349 Bma08g00389 . . . . . . . Car18g01240 . . . . . . . . . Cla05g00975 Cam05g1067 Cec05g1073 Cco05g1065 Clacu05g1059 Cmu05g1010 Cre05g1087 . Csa03g01978 Chy06g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014071 0 0 0 0 0 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 1 1 1 0 1 1 0 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38552 PF02042 RWP-RK 8.30E-19 No_clan Sed TF