Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1789 ATGGATGTGAATGGGAATAGACCTTTGAAACCTGTTCGAAGAAGTTCGTCTCAGAAAGAAAGTGAAAATGGAAGTCAAGTAGTTGTTGAAATCAGCAGGGTTGTGTCTTCTACAGAAAAAGAAACCAGAGATGGAATTTGCTATTCTGTTCCGAAGCAAAACAGAGTCGAATCACTCACGAAAGAGCCTATGGATTCGAGCATTGGCCATGATTCACATCTCGCTCCGACTGCCAATAAGCCCCCGAAAATCCCCAGTTCGAATGGAACCCTTACGCCTAGAAAATCCCTCAAAAGATCTGTGCTGTCGAAACCCAAATCCAGATTTGGGGAACAGCCCTGTTTCATGGATTCAGATCTGTTTGAGGAGAATCAATTGTCAACGAGGGACCAAATTGGTGCAACTTCATCCAGAAGCTCCGCTCACAACACTCCGAAGGAACAACATGAGGAAGAAGATGGTGAGGAAATCTACAAGACTGAGCAGTTGAAGAGGCACAAGAAAGTAAAGGTAATGACAGTGGTTAAGTGGGTTGGTGTTTTTTGCATCAGTGGTTGCTTGGTGGCTAGCTTGACTGTTAACCGTTTGAAGAATGGCTTACTTTGGGGTTTGAGAGTTTGGAAATGGTGTTTGCTTGCTACTGTCATTTTGTGTGGAATGATAATTACTAATTGGGTTATGAATGTGATTGTGTATTTGATTGAGAGGAACTTTTTGCTTAAGAAAAAAGTATTTTATTTTGTCCATGGGTTGAAGAAGAGTGTCCAAGTGACCCTTTGGTTGACATTGGTTCTTGTTACGTGGGTGCTCTTGTTCGATCAGAATAGCCGTAAGATTTCGAGATCGAGGAAAACTCAAAATATTTTGGATGCCGTTACATGGACTCTGGTAACCCTTCTAATAGGGGCATTTTTGTGGTTGGTCAAGACATTGTTGTTGAAAATACTGGCATCCAAGTTTCATATGAACCGGTTTTTCGACCGAATTCAGGAATCTATTTTCCATCATCACGTTCTACAAACCCTCTTGAACCCTTCATCAATTGGTATGACTGAAAGTACTGCCGCATCTAATAGTGGTCGATTAAGTTTTAAGGGTAAAAAAGCAGACGATAAAAAGGTGATTGATATGGGAAAGATTCACCAGCTGAAGCGAGAGAAGGTTTCAGCTTGGACGATGAAGGTGTTGGTCGATGCCGTTACAAGCTCGGAGATGTCGATCTCACAACTACTTGATGAAAGCTATGAAAATGTTGTTGATGGTGAGGTCGCTGATGAAATGGAAGTTGCAAAAAGTGCTGCCTATAAGATCTTCAACAATATTGCTCTTCCTGGAAACAAGTTCATAGAGGAAGAAGATCTTCTGAATGTCATGATCAAAGAAGAGGTTTATCTTGTGTTACCGCTCTTTGAGGTAGATGAGACAAGGAGGATAGACATGAAAGCTCTAACAAAATGGGTGCTGAAGGTTTATCAAGAGAGGAAAACACTAGCACATGCCTTGAAAGATACCAAAACAGCAGTGAAGCAGTTGAATAGTTTGGTAACAGCGGTTCTTATAATAGTAACAGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACAACCAAAGTTCTGGTCTTCCTTCTATCTCAACTTGCAGTGGCAGCTTTCATGTTCGGAAACACTTGCAAGACTACATTCGAAGCTCTAATCTTCGTGTTCGTTATGCATCCTTTCGATGTCGGTGACCGTTGTTCTGTCGATGGCGTCCCGTTGTTGGTTGAAGAAATGAACATCTTGACAACAGTCTTCTTGAAACTCAACAATGAGAAGGTGTACTATCCCAACTCAGTTTTGGCAACCAAGGCCATCACTAATTACTACAGAAGTCCAGACATGTGCGACATGATAGAGTTCTCGATCGGTTTCACAACGCCACTGGAGAAGATTGGGGCAATGAAAGAGAGAATAAAGAGGTATTTGGAGAAGACTCCACAACACTGGCATCCGAATCACAATATCGTGGTGAAGGAGATCGAAGACGTGAATAAGATAAAGATCGCTCTTAATACGACCCATACCATGAATTTTCAAGATTGGATCGAGAAGAACCGACGGAGAACCGAGCTCGTGATGGAGCTGAAGAAGATTTTTGAAGAATTGAATATCAACTACAATCTTTTGCCTCAAACAGTTCATCTCTTCCCGGCCCAGGGGTATTGA 2205 41.86 MDVNGNRPLKPVRRSSSQKESENGSQVVVEISRVVSSTEKETRDGICYSVPKQNRVESLTKEPMDSSIGHDSHLAPTANKPPKIPSSNGTLTPRKSLKRSVLSKPKSRFGEQPCFMDSDLFEENQLSTRDQIGATSSRSSAHNTPKEQHEEEDGEEIYKTEQLKRHKKVKVMTVVKWVGVFCISGCLVASLTVNRLKNGLLWGLRVWKWCLLATVILCGMIITNWVMNVIVYLIERNFLLKKKVFYFVHGLKKSVQVTLWLTLVLVTWVLLFDQNSRKISRSRKTQNILDAVTWTLVTLLIGAFLWLVKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLLNPSSIGMTESTAASNSGRLSFKGKKADDKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSEMSISQLLDESYENVVDGEVADEMEVAKSAAYKIFNNIALPGNKFIEEEDLLNVMIKEEVYLVLPLFEVDETRRIDMKALTKWVLKVYQERKTLAHALKDTKTAVKQLNSLVTAVLIIVTAVIWLLLMEIATTKVLVFLLSQLAVAAFMFGNTCKTTFEALIFVFVMHPFDVGDRCSVDGVPLLVEEMNILTTVFLKLNNEKVYYPNSVLATKAITNYYRSPDMCDMIEFSIGFTTPLEKIGAMKERIKRYLEKTPQHWHPNHNIVVKEIEDVNKIKIALNTTHTMNFQDWIEKNRRRTELVMELKKIFEELNINYNLLPQTVHLFPAQGY 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31481104 31486743 + Sed0004729.2 Sed05g1789 714415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1789 734 PIRSF Memb_At2g17000 5 733 IPR016688 -
Sed05g1789 734 MobiDBLite consensus disorder prediction 81 97 - -
Sed05g1789 734 MobiDBLite consensus disorder prediction 131 158 - -
Sed05g1789 734 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 22 728 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Sed05g1789 734 SUPERFAMILY Sm-like ribonucleoproteins 561 621 IPR010920 -
Sed05g1789 734 MobiDBLite consensus disorder prediction 18 35 - -
Sed05g1789 734 Pfam Mechanosensitive ion channel, beta-domain 565 622 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g1789 734 FunFam Predicted mechanosensitive ion channel 572 621 - -
Sed05g1789 734 MobiDBLite consensus disorder prediction 1 110 - -
Sed05g1789 734 MobiDBLite consensus disorder prediction 143 158 - -
Sed05g1789 734 Gene3D - 572 621 IPR023408 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1786 Sed-Chr5:31480495 Sed05g1789 Sed-Chr5:31481104 0.00E+00 dispersed
Sed05g1787 Sed-Chr5:31480495 Sed05g1789 Sed-Chr5:31481104 0.00E+00 dispersed
Sed05g1789 Sed-Chr5:31481104 Sed13g1901 Sed-Chr13:23966687 3.80E-303 dispersed
Sed05g1788 Sed-Chr5:31480495 Sed05g1789 Sed-Chr5:31481104 4.20E-272 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1789 K22048 - csv:101217197 1033.09