Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1794 ATGACGATTTGGTGCTGCTTATGCTTCACCGTTGGAGACGAAGACGAAAAGGAACTGAAAATGCGTGGGGATGACTCTGATCGCGATGAGCGAAATGGGGTCGATTCTGAACCGACTGATCCGATTGCCAATTCTGTTTTCGGGCCCGATTGCCACGACAGTGATCGAATGAGGTCGTTTGAGGATATGAACAGAGCAATTGAAGACGACTGCGATGGCGGCGGTGGCGAGAGTAGTAGCGCCATGGCCTTGGCTTTGTCTTCCCCAATGGAGGCTTTTAATGAGGAGTGTGATCGTTATGCTCACCATAAGCGTGCTAAAGTTCACTCTGAAATCAATGAGTGCGCCTTTGCAACCCCATGGCCTTTAGGTGGTGGAAATTCTACAAGAGATTATGATTTTAGTCATGGGTCATCTTCTATTCTGACTAGGAATGAATTTTTCTATCATGCTTCTTCATCAAACCGAGTTGATGACGACAGGGATTTTGAATTTTGTTTTGGCAAAGATGATGAGATAAATGAGAATTGGGCCTGTAATTCAGAGGGGTCTGAAGTAAGAATGGATCTTACAGATGATTTACTGCATATGGTTTTCTCTTTCATGGATCCCATCAATCTTTGTCGAGCTGCTATAGTCTGCAGGCAGTGGCGAGCTGCTAGTGCTCATGAAGATTTCTGGAGGTGTTTGAATTTTGAAAATAGGAACATATCCATAGAACAGTTTGAGGATATGTGTCGACGGTATCCGAATGCTACAGAGGTTAATATCTCTGGTGTACCTGCTGTGCACTTGCTTTCCATGAAAGCAGTTTGTTCTTTGAGAAATCTGGAGGTCTTAACCCTGGGTAGAGGTCAACTGGGAGATAACTTTTTCCATGCCCTGGCTGGTTGCCATTTTTTGAAGAGCTTGACTGTCAATGATCCTACACTAGTTACTCAAGAGATACCTATAAGCCACGATAGATTGCGTCACCTTCATCTTACTAAATGTCGTGCTACACGAATATCTGTTAGATGTCCTCAACTTGAAACTCTGTCTTTGAAGCGCAGCAATATGGCACAGGCTGTTCTTAATTGCCCTCTTCTTCAGGACTTGGATATAGGCTCTTGCCACAAGCTCTCAGATGCTGCAATTCGCTCAGCAGCTATTTCGTGTCCCCAATTGGAATCTCTTGATATGTCTAATTGTTCGTGTGTTAGTGATGAGACATTACGTGAAATTGCTTTGACCTGCCCTAATCTCCAGCTTCTGAATGCATCTTACTGCCCAAATATATCTTTGGAGTCTGTAAGACTGACTATGCTGACCGTGCTTAAGCTTCACAGCTGTGAGGGTATCACATCAGCTTCAATGACTGCAATATCTAGTTACTCTAGGTTGAAGGTTTTGGAGCTTGATAATTGCAGTCTTTTGGCTTCTGTGTCACTGGATCTTCCTCGTTTGCAAAACATCAGGCTTGTCCATTGCCGCAAATTCTCTGATTTGAGTTTACAGAGTGTTGAATTATCATCCATAGTGGTCTCTAATTGTCCATCTCTTCACCGGATCAACATCACTTCCAATCTAGTTCAAAAATTAGTGTTGAAGAAACAAGAGAGCTTGGCCAAATTGGTTTTGCAGTGCCCTAATCTGCAAGATGTGGACCTGACAGACTGTGAATCTCTTACAAATTCTGTATGTGAGGTTTTTAGTGACGATGGTGGATGCCCTATGTTGAAATCACTTGTTCTTGATAACTGCAAGAATTTGACAGATGTTCGATTCTGTAGCAGATCGTTAGGAAGTCTTTCCCTTATCGGTTGCCGGAAAATCACTTCACTTGAACTTCATTGTCCTAATCTTGAACAAGTTTCTCTAGATGGCTGTGGTCTTCTTGAAAGAGCATCATTTTCCCCTGTTGGTTTGCGGTCACTAAATCTGGGAATTTGTCCTAAATTGAATGAATTAAAACTCGAGGCGCCTCATATGGATTTACTCGAGTTAAAAGGCTGTGGTGGGTTGTCAGAGGCAGCCATCAATTGTCCTCGTCTAACATCATTGGATGCTTCCTTTTGTTGCCAACTGAAAAACCAGTGTTTGTCTGCAACTACTGCGTCATGTCCACAGGTTGAGTCATTAATACTTATGTCATGTCGTGCTGTTTGTTCAGAGGGACTTTACTCTCTGCAATGTCTTCCGAAGCTGGTTGTACTCGATTTATCGTATACATCGTTGATGAGCTTGCAGCCAGTCTTTGAGTCTTGTCTTCAACTTAAGGTATTGAAACTACAAGCATGCAAGTGGTTAACCGACTCATCGCTAGAGCCTCTTTACAAAGAAGGTGCTCTTCCAGCTCTTCAGGAGTTAGACTTGTCTTATGGTCCAGTTTGTCAGTCCGCCATTGAAGAGCTTCTCGCTTGTTGCACACACTTAACTCATGTGAGCTTAAATGGGTGCGTGAACATGCATGATCTAAATTGGGATTGTAGCATTGGACAGCTTTCTTTGTCCGGCATCACTCTTCCTCTCGGTCAGGACAACCTCGACAATATTGAGGAAACGGTTGTACAGCCAAACCGTTTGCTACAGAATCTTAACTGTGTAGGTTGTATAAATATCAGGAAGGTCCTCATTCCTCCATCTGCACGTTGTTTTCATTTATCATCATTAAACCTATCTCTGTCTACAAACCTCAAAGAAGTTGACGTTTCTTGTTACAACCTATGCTTTCTTAACTTGAGTACTTGTGGCTCCCTGGAAATTTTGAGACTCGACTGCCCGAGACTGACCAGTCTATCTCTCCAGGTATTTCTCTTTTTTCCTTGTAAGTTTGGGACTATGAATAGTCCGAAATCTGGTCTTCAAGCGACTTGTAACTATTAG 2865 42.9 MTIWCCLCFTVGDEDEKELKMRGDDSDRDERNGVDSEPTDPIANSVFGPDCHDSDRMRSFEDMNRAIEDDCDGGGGESSSAMALALSSPMEAFNEECDRYAHHKRAKVHSEINECAFATPWPLGGGNSTRDYDFSHGSSSILTRNEFFYHASSSNRVDDDRDFEFCFGKDDEINENWACNSEGSEVRMDLTDDLLHMVFSFMDPINLCRAAIVCRQWRAASAHEDFWRCLNFENRNISIEQFEDMCRRYPNATEVNISGVPAVHLLSMKAVCSLRNLEVLTLGRGQLGDNFFHALAGCHFLKSLTVNDPTLVTQEIPISHDRLRHLHLTKCRATRISVRCPQLETLSLKRSNMAQAVLNCPLLQDLDIGSCHKLSDAAIRSAAISCPQLESLDMSNCSCVSDETLREIALTCPNLQLLNASYCPNISLESVRLTMLTVLKLHSCEGITSASMTAISSYSRLKVLELDNCSLLASVSLDLPRLQNIRLVHCRKFSDLSLQSVELSSIVVSNCPSLHRINITSNLVQKLVLKKQESLAKLVLQCPNLQDVDLTDCESLTNSVCEVFSDDGGCPMLKSLVLDNCKNLTDVRFCSRSLGSLSLIGCRKITSLELHCPNLEQVSLDGCGLLERASFSPVGLRSLNLGICPKLNELKLEAPHMDLLELKGCGGLSEAAINCPRLTSLDASFCCQLKNQCLSATTASCPQVESLILMSCRAVCSEGLYSLQCLPKLVVLDLSYTSLMSLQPVFESCLQLKVLKLQACKWLTDSSLEPLYKEGALPALQELDLSYGPVCQSAIEELLACCTHLTHVSLNGCVNMHDLNWDCSIGQLSLSGITLPLGQDNLDNIEETVVQPNRLLQNLNCVGCINIRKVLIPPSARCFHLSSLNLSLSTNLKEVDVSCYNLCFLNLSTCGSLEILRLDCPRLTSLSLQVFLFFPCKFGTMNSPKSGLQATCNY 954
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31539119 31546705 + Sed0000287.2 Sed05g1794 714420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1794 954 MobiDBLite consensus disorder prediction 18 36 - -
Sed05g1794 954 FunFam F-box/LRR-repeat protein 15 742 827 - -
Sed05g1794 954 SMART LRR_CC_2 433 458 IPR006553 -
Sed05g1794 954 SMART LRR_CC_2 479 504 IPR006553 -
Sed05g1794 954 SMART LRR_CC_2 360 385 IPR006553 -
Sed05g1794 954 SMART LRR_CC_2 749 774 IPR006553 -
Sed05g1794 954 SMART LRR_CC_2 542 566 IPR006553 -
Sed05g1794 954 SMART LRR_CC_2 701 726 IPR006553 -
Sed05g1794 954 SMART LRR_CC_2 675 700 IPR006553 -
Sed05g1794 954 SMART LRR_CC_2 802 831 IPR006553 -
Sed05g1794 954 SMART LRR_CC_2 412 432 IPR006553 -
Sed05g1794 954 SMART LRR_CC_2 570 608 IPR006553 -
Sed05g1794 954 SMART LRR_CC_2 386 411 IPR006553 -
Sed05g1794 954 SMART LRR_CC_2 612 642 IPR006553 -
Sed05g1794 954 FunFam F-box/LRR-repeat protein 15 182 430 - -
Sed05g1794 954 SUPERFAMILY L domain-like 383 530 - -
Sed05g1794 954 SMART fbox_2 190 230 IPR001810 GO:0005515(InterPro)
Sed05g1794 954 PANTHER OS10G0396666 PROTEIN 180 269 - -
Sed05g1794 954 SUPERFAMILY RNI-like 742 928 - -
Sed05g1794 954 Gene3D Ribonuclease Inhibitor 659 742 IPR032675 -
Sed05g1794 954 Gene3D Ribonuclease Inhibitor 743 825 IPR032675 -
Sed05g1794 954 SUPERFAMILY F-box domain 189 220 IPR036047 GO:0005515(InterPro)
Sed05g1794 954 Gene3D Ribonuclease Inhibitor 224 526 IPR032675 -
Sed05g1794 954 CDD F-box_FBXO41 192 228 - -
Sed05g1794 954 Pfam F-box domain 189 228 IPR001810 GO:0005515(InterPro)
Sed05g1794 954 SUPERFAMILY RNI-like 210 428 - -
Sed05g1794 954 Gene3D Ribonuclease Inhibitor 527 658 IPR032675 -
Sed05g1794 954 Gene3D - 182 223 - -
Sed05g1794 954 ProSiteProfiles F-box domain profile. 184 230 IPR001810 GO:0005515(InterPro)
Sed05g1794 954 MobiDBLite consensus disorder prediction 18 50 - -
Sed05g1794 954 SUPERFAMILY RNI-like 535 768 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1794 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1794 Sed-Chr5:31539119 Sed13g1905 Sed-Chr13:24024068 6.10E-277 dispersed
Sed05g1793 Sed-Chr5:31539119 Sed05g1794 Sed-Chr5:31539119 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g161 . . . . Bpe02g01559 . . . . . . . Car09g00313 . . . Cpe06g00258 . . . . . . . Cla05g01626 . . . Clacu05g1726 . Cre05g1739 . . . . Lsi04g01388 . . . Blo17g00273 Blo18g00056 Bda01g01346 Bda13g01586 Bpe14g00280 . Bma01g00911 Bma02g00548 Sed05g1794 Cmo01g01810 . . . Car01g01319 . . Cpe02g00290 Bhi09g03083 Tan01g3471 Cmetu07g1629 . Hepe01g1916 Mch11g0451 . . . . . . . . . . . Cme07g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42