Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1798 ATGGCATTTCCTGTTGAGCTTGTTGTTCTGGTTTTTCTCATCTGTGCTAGCGTTGGTTTGGTGGATTCTGATGATGGAGCAACGTTGTTGGACATAAAGAAATCATTCAGGAATGAGGATAATGTTCTCTATGATTGGACAAACTCACCATCTTCAGACTACTGTATATGGAGAGGTGTAACCTGTGACAATGCCACTCTCAAAGTTATCTCTCTTAATCTTTCAGGTCTCAATCTGGACGGGGAAATTTCTCCTTCGATTGGCAACCTCAAGGGCCTGCAAAATTTGGATTTGAGGGCTAGTAGTATTTCTGGTCAAATTCCAGACGAGATTGGTGACTGCTCTTCCTTAATAAATCTGGACTTATCATTTAATGAGATTTCTGGTGACATACCATTTTCCATTTCGAAGTTGAAGCAACTTGAAATGCTAGTTCTGAAAAATAATCGGCTTATTGGACCGATCCCGTCGACCTTATCTCAGATTCCAAACTTGAAGGTCTTAGATTTCGCACAGAATAATCTTAGCGGGGAAATACCAAGACTAATTTACTGGAATGAAGTGTTGCAATATCTTGGTTTGCGTGGCAATAATTTGGTGGGCACACTCTCACCAGATATGTGTCAGCTCACTGGCTTATGGTATTTTGATGTGAGAAACAACAGTTTAACAGGCAGCATACCTCAAACTATAGGCAACTGCACAGCCTTCCAGGTCTTGGACCTCTCATACAATCATCTTACTGGAGAGATACCATTCAACATTGGTTTCCTTCAAGTAGCCACATTGTCCTTACAGGGTAATAAGTTGTCAGGTCCCATCCCACCAGTAATAGGTCTGATGCAGGCACTTGCTGTGCTAGATTTATGCTGCAACATGTTAACTGGTCCAATCCCCTCTATCTTAGGAAATCTGACTTACACTGAGAAATTGTACTTGCATAGTAATAAGCTCACAGGGTCCATTCCAGCTGAGCTCGGGAATATGACGAAGCTCCATTATCTGGAACTGAATGATAATCATCTTACTGGGAATATTCCAGCTGAGCTTGGGAAACTCACCGATCTATTTGATTTAAATGTTGCTAATAACAATCTTGGAGGGCCTATCCCTGATAATCTTAGCTCATGTACGAATCTCAACAGCCTAAATGTGCATGGCAACAAGTTGAATGGAACTATTCCACCTTCTTTCCAGAGGCTAGAGAGTATGACTTACTTGAATCTCTCCTCAAACGATCTACGAGGTCCCATTCCAGTTGAGCTGTCTCGTATCGGAAATTTGGATAAGTTAGACATCTCCAATAACAAAATTAATGGCACAATTCCTCCGTCATTCGGCGATCTGGAACATCTCCTAAAGTTAAATTTGAACAGGAATCATCTAAAGGGATTTATTCCTGCTGAGTTTGGCAACCTAAGGAGTGTAATGGAAATAGATATTTCACACAATCAGCTCTCTGGGTTCATTCCTCAAGAACTGAGTCAACTTCAAAATCTGCTCTCCTTGAGACTCGAATACAACAATTTGTCTGGGGCCGTGACATCACTCATAAACTGCCTGAGCCTTACTGAATTAAACATATCTTATAACAATCTAGCTGGAGACATTCCCACAAGCAACAACTTCTCCAGGTTCTCATCTGACAGTTTCCTTGGAAATCTTGCCCTCTGTGGATATTGGAATAGCAACAACTATCCCTGTCATGAAGTTCATATGACAGAGCGAGTGACAATCTCTAAAGCTGCTATTCTGGGAATTGCTTTTGGTGCCCTGGTAATTTTTCTAATGATCCTCGTAACACCAGCGTGCTGTCCAAACAACACAATAACTTTTACAGACGGATCCCTCGATAAACCAGTTACTTATTCAACTCCTAAGCTAGTTATCTTTCACATGAATATGGCTCTTCATGTGTATGAGGATATTATGAGGATGACTGAAAATTTGAGCGAAAAGTACATAATCGGACACGGAGCTTCAAGCACAGTCTACAAATGTGTACTGAAGAATTGCAAACCTGTGGCTGTCAAAAAGATCTACTCTCACCAGCCCCTTAGCATGAAGGCCTTCGAGACCGAACTCGAAACCATGGGTAGCATCAAGCACAGAAATCTAGTCAGCCTCCAAGGATACTCCTTGTCTCCCTTTGAGAACCTCCTCTTCTATGACTACATGGAGAATGGCAGTCTTTGGGACCATCTACATGGCACTAGCTCTACCAAGATGAAAAGGCTAGACTGGGACACTCGGCTTAATATAGCACATGGAGCAGCTCAAGGACTATCATATCTCCACCACGATTGTAGCCCTCGGATTATCCACAGGGATGTCAAGTCATCAAACATTCTACTAGACAAGGATTTTGAAGCCCACCTCACTGATTTCGGCATCGCCAAGAGTTTATGCACCTCGAAGACATATACGTCCACTTATATCATGGGAACCATTGGATACATCGATCCAGAGTATGCTCGGACTTCCCGACTTACAGAGAAGTCTGATGTTTACAGCTTTGGAATTGTGTTACTTGAATTGCTCACAGGAAGAAAAGCTGTGGATGATGAATCAAACCTCCACCAATTGATCTTATCAAAGACAGCCAACAATGCTGTGATGGAGACAGTTGATCCTGAAATAACTGCAACTTGCAAGGACCTTGGAGCAGTTAAAAAGGCATTTCAGCTTGCTCTCCTATGCACCAAGAGGCATCCATCCAATCGGCCAACAATGCACGAAGTAACGAACATCATCGGGAGTCTTCTGCCCTCTCCCACACCACTAAAGCCAACACCAACCATAACATCCATGCCCCCATCTGCAAAAGTCCCTTCCTACAAGGACGAGTACACAAATCTAAAAACGCCGCACTTGCTAAACTGCCCATCCATGAGCACCTCAGACACCCAGCTCTTCCTCAAGTTCGGAGAGGTCATATCACAGAACAGCGAGTAA 2955 42.84 MAFPVELVVLVFLICASVGLVDSDDGATLLDIKKSFRNEDNVLYDWTNSPSSDYCIWRGVTCDNATLKVISLNLSGLNLDGEISPSIGNLKGLQNLDLRASSISGQIPDEIGDCSSLINLDLSFNEISGDIPFSISKLKQLEMLVLKNNRLIGPIPSTLSQIPNLKVLDFAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGTLSPDMCQLTGLWYFDVRNNSLTGSIPQTIGNCTAFQVLDLSYNHLTGEIPFNIGFLQVATLSLQGNKLSGPIPPVIGLMQALAVLDLCCNMLTGPIPSILGNLTYTEKLYLHSNKLTGSIPAELGNMTKLHYLELNDNHLTGNIPAELGKLTDLFDLNVANNNLGGPIPDNLSSCTNLNSLNVHGNKLNGTIPPSFQRLESMTYLNLSSNDLRGPIPVELSRIGNLDKLDISNNKINGTIPPSFGDLEHLLKLNLNRNHLKGFIPAEFGNLRSVMEIDISHNQLSGFIPQELSQLQNLLSLRLEYNNLSGAVTSLINCLSLTELNISYNNLAGDIPTSNNFSRFSSDSFLGNLALCGYWNSNNYPCHEVHMTERVTISKAAILGIAFGALVIFLMILVTPACCPNNTITFTDGSLDKPVTYSTPKLVIFHMNMALHVYEDIMRMTENLSEKYIIGHGASSTVYKCVLKNCKPVAVKKIYSHQPLSMKAFETELETMGSIKHRNLVSLQGYSLSPFENLLFYDYMENGSLWDHLHGTSSTKMKRLDWDTRLNIAHGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDDESNLHQLILSKTANNAVMETVDPEITATCKDLGAVKKAFQLALLCTKRHPSNRPTMHEVTNIIGSLLPSPTPLKPTPTITSMPPSAKVPSYKDEYTNLKTPHLLNCPSMSTSDTQLFLKFGEVISQNSE 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31590989 31598100 + Sed0015686.1 Sed05g1798 714424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1798 984 Gene3D Transferase(Phosphotransferase) domain 1 726 924 - -
Sed05g1798 984 CDD STKc_IRAK 656 914 - -
Sed05g1798 984 Pfam Leucine rich repeat 284 342 IPR001611 GO:0005515(InterPro)
Sed05g1798 984 Pfam Leucine rich repeat 427 486 IPR001611 GO:0005515(InterPro)
Sed05g1798 984 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515(InterPro)
Sed05g1798 984 SUPERFAMILY Protein kinase-like (PK-like) 627 916 IPR011009 -
Sed05g1798 984 SUPERFAMILY L domain-like 259 547 - -
Sed05g1798 984 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 621 725 - -
Sed05g1798 984 ProSiteProfiles Protein kinase domain profile. 650 922 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1798 984 Gene3D Ribonuclease Inhibitor 347 439 IPR032675 -
Sed05g1798 984 Gene3D Ribonuclease Inhibitor 22 186 IPR032675 -
Sed05g1798 984 Gene3D Ribonuclease Inhibitor 440 567 IPR032675 -
Sed05g1798 984 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 297 570 - -
Sed05g1798 984 Gene3D Ribonuclease Inhibitor 258 346 IPR032675 -
Sed05g1798 984 SMART LRR_typ_2 329 353 IPR003591 -
Sed05g1798 984 SMART LRR_typ_2 425 448 IPR003591 -
Sed05g1798 984 SMART LRR_typ_2 210 234 IPR003591 -
Sed05g1798 984 SMART LRR_typ_2 497 520 IPR003591 -
Sed05g1798 984 SMART LRR_typ_2 162 186 IPR003591 -
Sed05g1798 984 SMART LRR_typ_2 449 472 IPR003591 -
Sed05g1798 984 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 22 186 - -
Sed05g1798 984 Pfam Protein kinase domain 653 915 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1798 984 ProSitePatterns Protein kinases ATP-binding region signature. 656 679 IPR017441 GO:0005524(InterPro)
Sed05g1798 984 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Sed05g1798 984 SUPERFAMILY L domain-like 49 300 - -
Sed05g1798 984 Pfam Leucine Rich Repeat 238 257 IPR001611 GO:0005515(InterPro)
Sed05g1798 984 Pfam Leucine Rich Repeat 404 423 IPR001611 GO:0005515(InterPro)
Sed05g1798 984 Pfam Leucine Rich Repeat 213 234 IPR001611 GO:0005515(InterPro)
Sed05g1798 984 Pfam Leucine Rich Repeat 379 401 IPR001611 GO:0005515(InterPro)
Sed05g1798 984 Pfam Leucine Rich Repeat 522 540 IPR001611 GO:0005515(InterPro)
Sed05g1798 984 Pfam Leucine Rich Repeat 164 183 IPR001611 GO:0005515(InterPro)
Sed05g1798 984 Gene3D Ribonuclease Inhibitor 187 257 IPR032675 -
Sed05g1798 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 773 785 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1798 984 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 187 296 - -
Sed05g1798 984 Gene3D Phosphorylase Kinase; domain 1 618 725 - -
Sed05g1798 984 SMART serkin_6 650 918 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1798 984 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 726 928 - -
Sed05g1798 984 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 325 916 IPR051716 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3620 Sed-Chr1:65410772 Sed05g1798 Sed-Chr5:31590989 5.00E-19 dispersed
Sed05g1798 Sed-Chr5:31590989 Sed08g2570 Sed-Chr8:38220240 7.70E-65 dispersed
Sed13g1910 Sed-Chr13:24071046 Sed05g1798 Sed-Chr5:31590989 3.00E-264 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79178 PF00069 Pkinase 7.90E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1798 K20718 - csv:101214398 1756.11